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Juza, T., and J. Kubečka. 2007. The efficiency of three fry trawls for sampling the freshwater pelagic fry community. Fisheries Research 85: 285-290.

Juza, T., J. Zemanová, M. Tuser, Z. Sajdlova, R. Baran, M. Vasek, D. Ricard, P. Blabolil, A. J. Wagenvoort, H. A. M. Ketelaars, and J. Kubečka. 2015. Pelagic occurrence and diet of invasive round goby Neogobius melanostomus (Actinopterygii, Gobiidae) juveniles in deep well-mixed European reservoirs. Hydrobiologia , doi:10.1007/s10750-015-2548-y

Juza, T., G. Rakowitz, V. Drastik, P. Blabolil, A. Herzig, M. Kratochvil, M. Muska, M. Riha, Z. Sajdlova, and J. Kubečka. 2013. Avoidance reactions of fish in the trawl mouth opening in a shallow and turbid lake at night. Fisheries Research 147: 154-160.

Juračka, P. J., J. Dobiáš, David S. Boukal, M. Sorf, L. Beran, M. Černý, and A. Petrusek. 2019. Spatial context strongly affects community composition of both passively and actively dispersing pool invertebrates in a highly heterogeneous landscape. Freshwater Biology 64: 2093-2106.

Juergens, K., and K. Šimek. 2000. Functional response and particle size selection of Halteria cf. grandinella, a common freshwater oligotrichous ciliate. Aquatic Microbial Ecology 22: 57-68.

Jorgensen, C., K. Enberg, E. S. Dunlop, R. Arlinghaus, David S. Boukal, K. Brander, B. Ernande, A. Gardmark, F. D. Johnston, S. Matsumura, H. Pardoe, K. Raab, A. Silva, A. Vainikka, U. Dieckmann, M. Heino, and A. D. Rijnsdorp. 2008. The role of fisheries-induced evolution - Response. SCIENCE 320: 48-50.

Jorgensen, C., K. Enberg, E. S. Dunlop, R. Arlinghaus, David S. Boukal, K. Brander, B. Ernande, A. Gaerdmark, F. D. Johnston, S. Matsumura, H. Pardoe, K. Raab, A. Silva, A. Vainikka, U. Dieckmann, M. Heino, and A. D. Rijnsdorp. 2007. Ecology - Managing evolving fish stocks. SCIENCE 318: 1247-1248.

Jezberova, J., J. Jezbera, P. Znachor, J. Nedoma, V. Kasalicky, and K. Šimek. 2017. Limnohabitans genus harbor generalist and opportunist genotype groups: evidence from spatiotemporal succession in a canyon-shaped reservoir. Appl. Environ. Microbiol. 83: e01530-17.

Jezbera, J., K. Hornak, and K. Šimek. 2006. Prey selectivity of bacterivorous protists in different size fractions of reservoir water amended with nutrients. Environmental Microbiology 8: 1330-1339.

Jezbera, J., J. Nedoma, and K. Šimek. 2003. Longitudinal changes in protistan bacterivory and bacterial production in two canyon-shaped reservoirs of different trophic status. Hydrobiologia 504: 115-130.

Jezbera, J., J. Jezberova, U. Koll, K. Hornak, K. Šimek, and M. W. Hahn. 2012. Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467-479.

Jezbera, J., J. Jezberova, V. Kasalicky, K. Šimek, and M. W. Hahn. 2013. Patterns of Limnohabitans microdiversity across a large set of freshwater habitats as revealed by Reverse Line Blot Hybridization. PLoS ONE 8: e58527.

Jezbera, J., K. Hornak, and K. Šimek. 2005. Food selection by bacterivorous protists: insight from the analysis of the food vacuole content by means of Fluorescence In Situ Hybridization. FEMS Microbiology Ecology 52: 351-363.

Jersakova, J., and S. D. Johnson. 2006. Lack of floral nectar reduces self-pollination in a fly-pollinated orchid. Oecologia 147: 60–68.

Jersakova, J., I. Traxmandlova, Z. Ipser, M. Kropf, G. Pellegrino, B. Schatz, V. Djordjevic, P. Kindlmann, and S. S. Renner. 2015. Biological flora of Central Europe: Dactylorhiza sambucina (L.) Soo. PERSPECTIVES IN PLANT ECOLOGY EVOLUTION AND SYSTEMATICS 17: 318-329.

Jersakova, J., and P. Kindlmann. 2004. Reproductive success and sex variation in nectarless and rewarding orchids. International Journal of Plant Sciences 165: 779–785.

Jersakova, J. 2008. Do nectar manipulation studies support the cross-pollination hypothesis?. South African Journal of Botany 74: 369-369.

Jersakova, J., and S. D. Johnson. 2007. Protandry promotes male pollination success in a moth-pollinated orchid. Functional Ecology 21: 496–504.

Jersakova, J., and T. Malinova. 2007. Spatial aspects of seed dispersal and seedling recruitment in orchids. New Phytologist 176: 237-241.

Jersakova, J., A. Juergens, P. Smilauer, and S. D. Johnson. 2012. The evolution of floral mimicry: identifying traits that visually attract pollinators. Functional Ecology 26: 1381–1389.

Jersakova, J., S. Castro, N. Sonk, K. Milchreit, I. Schoedelbauerova, T. Tolasch, and S. Doetterl. 2010. Absence of pollinator-mediated premating barriers in mixed-ploidy populations of Gymnadenia conopsea s.l. (Orchidaceae). Evolutionary Ecology 24: 1199–1218.

Jersakova, J., P. Travnicek, B. Kubatova, J. Krejcikova, T. Urfus, Z. - J. Liu, A. Lamb, J. Ponert, K. Schulte, V. Curn, J. Vrana, I. J. Leitch, and J. Suda. 2013. Genome size variation in Orchidaceae subfamily Apostasioideae: filling the phylogenetic gap. Botanical Journal of the Linnean Society 172: 95–105.

Jersakova, J., P. Kindlmann, and M. Stritesky. 2002. Population dynamics of Orchis morio in the Czech Republic under human influence. Trends and Fluctuations and Underlying Mechanisms In Terrestrial Orchid Populations 209–224.

Jersakova, J., S. D. Johnson, P. Kindlmann, and A. - C. Pupin. 2008. Effect of nectar supplementation on male and female components of pollination success in the deceptive orchid Dactylorhiza sambucina. Acta Oecologica-international Journal of Ecology 33: 300–306.

Jersakova, J., T. Malinova, K. Jerabkova, and S. Doetterl. 2011. Biological Flora of the British Isles: Pseudorchis albida (L.) A. & D. Love. Journal of Ecology 99: 1282–1298.