Biblio

Šimek, K., K. Hornak, M. Masin, U. Christaki, J. Nedoma, M. G. Weinbauer, and J. R. Dolan. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135.

Šimek, K., M. Macek, J. Seda, and V. Vyhnalek. 1990. Possible food chain relationships between bacterioplankton, protozoans and cladocerans in a reservoir. Internationale Revue der Gesamten Hydrobiologie 75: 583-596.

Šimek, K., J. Vrba, J. Pernthaler, T. Posch, P. Hartman, J. Nedoma, and R. Psenner. 1997. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Applied and Environmental Microbiology 63: 587–595.

Šimek, K. 1982. The occurrence of faecal bacteria in a fish pond with a duck farm. Internationale Revue Der Gesamten Hydrobiologie 67: 851-868.

Šimek, K., P. Hartman, J. Nedoma, J. Pernthaler, D. Springmann, J. Vrba, and R. Psenner. 1997. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology 12: 49–63.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, and J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, and R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., and T. H. Chrzanowski. 1992. Direct and indirect evidence of size-selective grazing on pelagic bacteria by fresh-water nanoflagellates. Applied and Environmental Microbiology 58: 3715-3720.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, P. Znachor, J. Hejzlar, and J. Seda. 2008. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology 51: 249-262.

Šimek, K., I. Mukherjee, J. Nedoma, C. C. P. Paula, J. Jezberová, D. Sirová, and J. Vrba. 2022. CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes. Environmental Microbiology 24: 4256–4273.

Šimek, K., M. Macek, J. Pernthaler, V. Straskrabova, and R. Psenner. 1996. Can freshwater planktonic ciliates survive on a diet of picoplankton?. Journal of Plankton Research 18: 597-613.

Šimek, K., G. Pitsch, M. M. Salcher, D. Sirova, T. Shabarova, L. Adamec, and T. Posch. 2017. Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology 64: 336-348.

Šimek, K., J. Vrba, and P. Lavrentyev. 1994. Estimates of protozoan bacterivory: From microscopy to ectoenzyme assay?. Marine Microbial Food Webs 8: 71–85.

Šimek, K. 1986. Bacterial activity in a reservoir determined by autoradiography and its relationships to phytoplankton and zooplankton. Internationale Revue der Gesamten Hydrobiologie 71: 593-612.

Šimek, K., and J. Fuksa. 1987. Comparison of changes of microbial activity in water determined autoradiographically and as maximum rate of glucose incorporation. Folia Microbiologica 32: 508.

Šimek, K., V. Kasalicky, K. Hornak, M. W. Hahn, and M. G. Weinbauer. 2010. Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Applied and Environmental Microbiology 76: 1406–1416.

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, and J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.

Šimek, K., J. Nedoma, P. Znachor, V. Kasalicky, J. Jezbera, K. Hornak, and J. Seda. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492.

Šimek, K., D. Babenzien, T. Bittl, R. Koschel, M. Macek, J. Nedoma, and J. Vrba. 1998. Microbial food webs in an artificially divided acidic bog lake. International Review of Hydrobiology 83: 3–18.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, J. Vrba, V. Straskrabova, M. Macek, J. R. Dolan, and M. W. Hahn. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology 8: 1613–1624.

Šimek, K., P. Kojecka, J. Nedoma, P. Hartman, J. Vrba, and J. R. Dolan. 1999. Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir. Limnology and Oceanography 44: 1634–1644.

Šimek, K., J. Vrba, and P. Hartman. 1994. Size-selective feeding by Cyclidium sp. on bacterioplankton and various sizes of cultured bacteria. FEMS Microbiology Ecology 14: 157–167.

Šimek, K., and J. Fuksa. 1989. Responses in bacterial activity to changing conditions in plankton - probable controlling mechanisms. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 33: 239-248.

Šimek, K., V. Grujčić, J. Nedoma, J. Jezberova, M. Sorf, A. Matoušů, L. Pechar, T. Posch, E. P. Bruni, and J. Vrba. 2019. Microbial food webs in hypertrophic fishponds: omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography 64: 2295–2309.

Šimek, K., K. Juergens, J. Nedoma, M. Comerma, and J. Armengol. 2000. Ecological role and bacterial grazing of Halteria spp.: small freshwater oligotrichs as dominant pelagic ciliate bacterivores. Aquatic Microbial Ecology 22: 43-56.