Biblio

Sirova, D., V. Kreidlová, L. Adamec, and J. Vrba. 2020. The ability of Tetrahymena utriculariae (Ciliophora, Oligohymenophorea) to colonize traps of different species of aquatic carnivorous Utricularia. Journal of Eukaryotic Microbiology 67: 608–611.

Sirova, D., J. Borovec, B. Cerna, E. Rejmankova, L. Adamec, and J. Vrba. 2009. Microbial community development in the traps of aquatic Utricularia species. Aquatic Botany 90: 129–136.

Sirova, D., J. Borovec, J. Santrucek, J. Vrba, and L. Adamec. 2010. Utricularia carnivory revisited: plants supply photosynthetic carbon to traps. JOURNAL OF EXPERIMENTAL BOTANY 61: 99-103.

Sirova, D., L. Adamec, and J. Vrba. 2003. Enzymatic activities in traps of four aquatic species of the carnivorous genus Utricularia. New Phytologist 159: 669–675.

Sirova, D., J. Borovec, T. Picek, L. Adamec, L. Nedbalova, and J. Vrba. 2011. Ecological implications of organic carbon dynamics in the traps of aquatic carnivorous Utricularia plants. FUNCTIONAL PLANT BIOLOGY 38: 583-593.

Sirova, D., J. Bárta, J. Borovec, and J. Vrba. 2018. The Utricularia-associated microbiome: composition, function, and ecology, In Carnivorous plants: Physiology, ecology, and evolution. Oxford University Press.

Sirova, D., J. Bárta, K. Šimek, T. Posch, J. Pech, J. Stone, J. Borovec, L. Adamec, and J. Vrba. 2018. Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome 225, doi:10.1186/s40168-018-0600-7

Sirova, D., J. Santrucek, L. Adamec, J. Bárta, J. Borovec, J. Pech, S. M. Owens, R. Schaeufele, H. Štorchová, and J. Vrba. 2014. Dinitrogen fixation associated with shoots of aquatic carnivorous plants: is it ecologically important?. ANNALS OF BOTANY 114: 125-133.

Singh, P., E. Ekrtová, E. Holá, T. Štechová, S. Grill, and M. Hájek. 2021. Restoration of rare bryophytes in degraded rich fens: The effect of sod-and-moss removal. Journal for Nature Conservation 59: 125928.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, and R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., and T. H. Chrzanowski. 1992. Direct and indirect evidence of size-selective grazing on pelagic bacteria by fresh-water nanoflagellates. Applied and Environmental Microbiology 58: 3715-3720.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, P. Znachor, J. Hejzlar, and J. Seda. 2008. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology 51: 249-262.

Šimek, K., and D. Sirova. 2019. Fluorescently labeled bacteria used as a tracer can reveal novel pathways of organic carbon flow in aquatic ecosystems. Journal of Visualized Experiments 151: e59903.

Šimek, K., V. Grujčić, I. Mukherjee, V. Kasalický, J. Nedoma, T. Posch, M. Mehrshad, and M. M. Salcher. 2020. Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology 96: fiaa121.

Šimek, K., M. Macek, J. Pernthaler, V. Straskrabova, and R. Psenner. 1996. Can freshwater planktonic ciliates survive on a diet of picoplankton?. Journal of Plankton Research 18: 597-613.

Šimek, K., J. Vrba, and P. Lavrentyev. 1994. Estimates of protozoan bacterivory: From microscopy to ectoenzyme assay?. Marine Microbial Food Webs 8: 71–85.

Šimek, K. 1986. Bacterial activity in a reservoir determined by autoradiography and its relationships to phytoplankton and zooplankton. Internationale Revue der Gesamten Hydrobiologie 71: 593-612.

Šimek, K., and J. Fuksa. 1987. Comparison of changes of microbial activity in water determined autoradiographically and as maximum rate of glucose incorporation. Folia Microbiologica 32: 508.

Šimek, K., V. Kasalicky, K. Hornak, M. W. Hahn, and M. G. Weinbauer. 2010. Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Applied and Environmental Microbiology 76: 1406–1416.

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, and J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.

Šimek, K., D. Babenzien, T. Bittl, R. Koschel, M. Macek, J. Nedoma, and J. Vrba. 1998. Microbial food webs in an artificially divided acidic bog lake. International Review of Hydrobiology 83: 3–18.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, J. Vrba, V. Straskrabova, M. Macek, J. R. Dolan, and M. W. Hahn. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology 8: 1613–1624.

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, and T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759

Šimek, K., P. Kojecka, J. Nedoma, P. Hartman, J. Vrba, and J. R. Dolan. 1999. Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir. Limnology and Oceanography 44: 1634–1644.

Šimek, K., I. Mukherjee, T. Szöke-Nagy, M. Haber, M. M. Salcher, and R. Ghai. 2022. Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores. The ISME Journal