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Strojsova, A., and J. Vrba. 2009. Short-term variation in extracellular phosphatase activity: possible limitations for diagnosis of nutrient status in particular algal populations. Aquatic Ecology 43: 19–25.

Posch, T., J. Jezbera, J. Vrba, K. Šimek, J. Pernthaler, S. Andreatta, and B. Sonntag. 2001. Size selective feeding in Cyclidium glaucoma (Ciliophora, Scuticociliatida) and its effects on bacterial community structure: A study from a continuous cultivation system. Microbial Ecology 42: 217–227.

Šimek, K., J. Vrba, and P. Hartman. 1994. Size-selective feeding by Cyclidium sp. on bacterioplankton and various sizes of cultured bacteria. FEMS Microbiology Ecology 14: 157–167.

Santruckova, H., J. Vrba, T. Picek, and J. Kopacek. 2004. Soil biochemical activity and phosphorus transformations and losses from acidified forest soils. Soil Biology & Biochemistry 36: 1569–1576.

Borovec, J., D. Sirova, P. Mosnerova, E. Rejmankova, and J. Vrba. 2010. Spatial and temporal changes in phosphorus partitioning within a freshwater cyanobacterial mat community. BIOGEOCHEMISTRY 101: 323-333.

Svobodova, J., J. Matena, J. Kopacek, S. Polakova, and J. Vrba. 2012. Spatial and temporal changes of benthic macroinvertebrate assemblages in acidified streams in the Bohemian Forest (Czech Republic). AQUATIC INSECTS 34: 157-172.

Nedoma, J., and J. Vrba. 2006. Specific activity of cell-surface acid phosphatase in different bacterioplankton morphotypes in an acidified mountain lake. Environmental Microbiology 8: 1271-1279.

Straskrabova, V., J. Fott, P. Hartman, M. Macek, J. Nedoma, K. Šimek, and J. Vrba. 2000. Structure of pelagic food webs in low-alkalinity lakes - forested and alpine catchments. Silva Gabreta 4: 199 - 211.

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Sirova, D., J. Borovec, J. Santrucek, J. Vrba, and L. Adamec. 2010. Utricularia carnivory revisited: plants supply photosynthetic carbon to traps. JOURNAL OF EXPERIMENTAL BOTANY 61: 99-103.

Sirova, D., J. Bárta, J. Borovec, and J. Vrba. 2018. The Utricularia-associated microbiome: composition, function, and ecology, In Carnivorous plants: Physiology, ecology, and evolution. Oxford University Press.