Biblio

Shabarova, T., M. M. Salcher, P. Porcal, J. Nedoma, P. Znachor, H. - P. Grossart, J. Seďa, J. Hejzlar, and K. Šimek. 2021. Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. Nature Microbiology 6: 479–488.

Kavagutti, V. S., A. - Ş. Andrei, M. Mehrshad, M. M. Salcher, and R. Ghai. 2019. Phage-centric ecological interactions in aquatic ecosystems revealed through ultradeep metagenomics. Microbiome 7: 135.

Salcher, M. M., J. Hofer, K. Hornak, J. Jezbera, B. Sonntag, J. Vrba, K. Šimek, and T. Posch. 2007. Modulation of microbial predator-prey dynamics by phosphorus availability: Growth patterns and survival strategies of bacterial phylogenetic clades. FEMS Microbiology Ecology 60: 40–50.

Salcher, M. M., and K. Šimek. 2016. Isolation and cultivation of planktonic freshwater microbes is essential for a comprehensive understanding of their ecology. Aquatic Microbial Ecology 77: 183-196.

Salcher, M. M., C. Ewert, K. Šimek, V. Kasalicky, and T. Posch. 2016. Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology 92, doi:10.1093/femsec/fiv156

Mehrshad, M., M. M. Salcher, Y. Okazaki, S. Nakano, K. Šimek, S. A. Andrei, and R. Ghai. 2018. Hidden in plain sight - highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome 176.

Šimek, K., G. Pitsch, M. M. Salcher, D. Sirova, T. Shabarova, L. Adamec, and T. Posch. 2017. Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology 64: 336-348.

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, and M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.

Grujčić, V., J. Nuy, M. M. Salcher, T. Shabarova, V. Kasalicky, J. Boenigk, M. Jensen, and K. Šimek. 2018. Cryptophyta as major freshwater bacterivores in experiments with manipulated bacterial prey. ISME

Šimek, K., I. Mukherjee, T. Szöke-Nagy, M. Haber, M. M. Salcher, and R. Ghai. 2022. Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores. The ISME Journal

Mujakić, I., A. - Ş. Andrei, T. Shabarova, L. Kolesár-Fecskeová, M. M. Salcher, K. Piwosz, R. Ghai, and M. Koblížek. 2021. Common presence of phototrophic Gemmatimonadota in temperate freshwater lakes. mSystems 9: e01241-20.

Šimek, K., V. Grujčić, I. Mukherjee, V. Kasalický, J. Nedoma, T. Posch, M. Mehrshad, and M. M. Salcher. 2020. Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology 96: fiaa121.

Posch, T., B. Mindl, K. Hornak, J. Jezbera, M. M. Salcher, B. Sattler, B. Sonntag, J. Vrba, and K. Šimek. 2007. Biomass reallocation within freshwater bacterioplankton induced by manipulating phosphorus availability and grazing. Aquatic Microbial Ecology 49: 223–232.

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, and T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759