Biblio | Department of Ecosystem Biology

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A

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, and J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.

C

Šimek, K., M. Macek, J. Pernthaler, V. Straskrabova, and R. Psenner. 1996. Can freshwater planktonic ciliates survive on a diet of picoplankton?. Journal of Plankton Research 18: 597-613.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, and R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., P. Hartman, J. Nedoma, J. Pernthaler, D. Springmann, J. Vrba, and R. Psenner. 1997. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology 12: 49–63.

Pernthaler, J., T. Posch, K. Šimek, J. Vrba, R. Amann, and R. Psenner. 1997. Contrasting bacterial strategies to coexist with a flagellate predator in an experimental microbial assemblage. Applied and Environmental Microbiology 63: 596–601.

D

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, and M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.

E

Mindl, B., B. Sonntag, J. Pernthaler, J. Vrba, R. Psenner, and T. Posch. 2005. Effects of phosphorus loading on interactions of algae and bacteria: reinvestigation of the ’phytoplankton-bacteria paradox’ in a continuous cultivation system. Aquatic Microbial Ecology 38: 203-213.

Vrba, J., K. Šimek, J. Pernthaler, and R. Psenner. 1996. Evaluation of extracellular, high-affinity beta-N-acetylglucosaminidase measurements from freshwater lakes: An enzyme assay to estimate protistan grazing on bacteria and picocyanobacteria. Microbial Ecology 32: 81–99.

Vrba, J., J. Kofronova-Bobkova, J. Pernthaler, K. Šimek, M. Macek, and R. Psenner. 1997. Extracellular, low-affinity beta-N-acetylglucosaminidases linked to the dynamics of diatoms and crustaceans in freshwater systems of different trophic degree. Internationale Revue Der Gesamten Hydrobiologie 82: 277–286.

G

Macek, M., K. Šimek, J. Pernthaler, V. Vyhnalek, and R. Psenner. 1996. Growth rates of dominant planktonic ciliates in two freshwater bodies of different trophic degree. Journal of Plankton Research 18: 463-481.

M

Šimek, K., J. Vrba, J. Pernthaler, T. Posch, P. Hartman, J. Nedoma, and R. Psenner. 1997. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Applied and Environmental Microbiology 63: 587–595.

P

Pernthaler, J., T. Posch, K. Šimek, J. Vrba, A. Pernthaler, F. O. Glockner, U. Nubel, R. Psenner, and R. Amann. 2001. Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Applied and Environmental Microbiology 67: 2145–2155.

R

Allers, E., L. Gomez-Consarnau, J. Pinhassi, J. M. Gasol, K. Šimek, and J. Pernthaler. 2007. Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environmental Microbiology 9: 2417–2429.

S

Pernthaler, J., K. Šimek, B. Sattler, A. Schwarzenbacher, J. Bobkova, and R. Psenner. 1996. Short-term changes of protozoan control on autotrophic picoplankton in an oligo-mesotrophic lake. Journal of Plankton Research 18: 443-462.

Posch, T., J. Jezbera, J. Vrba, K. Šimek, J. Pernthaler, S. Andreatta, and B. Sonntag. 2001. Size selective feeding in Cyclidium glaucoma (Ciliophora, Scuticociliatida) and its effects on bacterial community structure: A study from a continuous cultivation system. Microbial Ecology 42: 217–227.

T

Pernthaler, J., B. Sattler, K. Šimek, A. Schwarzenbacher, and R. Psenner. 1996. Top-down effects on the size-biomass distribution of a freshwater bacterioplankton community. Aquatic Microbial Ecology 10: 255-263.

U

Eiler, A., S. Drakare, S. Bertilsson, J. Pernthaler, S. Peura, C. Rofner, K. Šimek, Y. Yang, P. Znachor, and E. S. Lindstrom. 2013. Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach. PLoS ONE 8: e53516.