Biblio | Department of Ecosystem Biology

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Šimek, K., J. Vrba, and P. Hartman. 1994. Size-selective feeding by Cyclidium sp. on bacterioplankton and various sizes of cultured bacteria. FEMS Microbiology Ecology 14: 157–167.

Šimek, K., and J. Fuksa. 1989. Responses in bacterial activity to changing conditions in plankton - probable controlling mechanisms. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 33: 239-248.

Šimek, K., I. Mukherjee, J. Nedoma, C. C. P. Paula, J. Jezberová, D. Sirová, and J. Vrba. 2022. CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes. Environmental Microbiology 24: 4256–4273.

(2.28 MB)

Šimek, K., K. Juergens, J. Nedoma, M. Comerma, and J. Armengol. 2000. Ecological role and bacterial grazing of Halteria spp.: small freshwater oligotrichs as dominant pelagic ciliate bacterivores. Aquatic Microbial Ecology 22: 43-56.

Šimek, M., N. M. Makarova, H. Santruckova, and T. S. Azarova. 1993. The influence of potassium fertilization on microorganisms in the soil under spring barley. Rostlinná vyroba 39: 193–202.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, P. Kojecka, J. Nedoma, and J. Hejzlar. 2001. Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microbial Ecology 42: 359-371.

Šimek, K., K. Hornak, J. Jezbera, M. Masin, J. Nedoma, J. M. Gasol, and M. Schauer. 2005. Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of beta-proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Applied And Environmental Microbiology 71: 2381-2390.

Šimek, K., V. Kasalicky, E. Zapomelova, and K. Hornak. 2011. Algal-derived substrates select for distinct betaproteobacterial lineages and contribute to niche separation in Limnohabitans strains. Appl. Environ. Microbiol. 77: 7307-7315.

Šimek, K., and V. Straskrabova. 1992. Bacterioplankton production and protozoan bacterivory in a mesotrophic reservoir. Journal of Plankton Research 14: 773-787.

Šimek, K., V. Grujčić, J. Nedoma, J. Jezberova, M. Sorf, A. Matoušů, L. Pechar, T. Posch, E. P. Bruni, and J. Vrba. 2019. Microbial food webs in hypertrophic fishponds: omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography 64: 2295–2309.

(7.88 MB)

Šimek, K., V. Grujčić, I. Mukherjee, V. Kasalický, J. Nedoma, T. Posch, M. Mehrshad, and M. M. Salcher. 2020. Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology 96: fiaa121.

Šimek, K., J. E. Cooper, T. Picek, and H. Santruckova. 2000. Denitrification in arable soils in relation to their physico-chemical properties and fertilization practice. Soil Biology & Biochemistry 32: 101–110.

Šimek, K., J. Jezbera, K. Hornak, J. Vrba, and J. Seda. 2004. Role of diatom-attached choanoilagellates of the genus Salpingoeca as pelagic bacterivores. Aquatic Microbial Ecology 36: 257–269.

Šimek, K., M. Macek, and V. Vyhnalek. 1990. Uptake of bacteria-sized fluorescent particles by natural protozoan assemblage in a reservoir. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 34: 276-281.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, T. H. Chrzanowski, M. Macek, J. Nedoma, and V. Straskrabova. 1998. Characteristics of protistan control of bacterial production in three reservoirs of different trophy. International Review of Hydrobiology 83: 485-494.

Šimek, K., M. G. Weinbauer, K. Hornak, J. Jezbera, J. Nedoma, and J. R. Dolan. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology 9: 789-800.

Šimek, K., D. W. Hopkins, J. Kalcik, T. Picek, H. Santruckova, J. Stana, and K. Travnik. 1999. Biological and chemical properties of arable soils affected by long-term organic and inorganic fertilizer applications. Biology and Fertility of Soils 29: 300–308.

Šimek, K., V. Kasalicky, J. Jezbera, J. Jezberova, J. Hejzlar, and M. W. Hahn. 2010. Broad habitat range of the phylogenetically narrow R-BT065 cluster representing a core group of the betaproteobacterial genus Limnohabitans. Applied and Environmental Microbiology 76: 631-639.

Šimek, M., and H. Santruckova. 1999. Influence of storage of soil samples on microbial biomass and its activity. Rostlinna vyroba 45: 415–419.

S

Sima, J., K. Diakova, and V. Holcova. 2007. Redox processes of sulfur and manganese in a constructed wetland. Chemistry & Biodiversity 4: 2900 - 2912.

Sima, J., V. Holcova, J. Dusek, and K. Diakova. 2006. Analytical approach to study of redox properties of constructed wetland. CHEMICKE LISTY 100: 911 - 918.

Sima, J., and V. Holcova. 2011. Removal of Nonionic Surfactants from Wastewater Using a Constructed Wetland. Chemistry & Biodiversity 8: 1819 - 1832.

Sima, J., M. Havelka, and V. Holcova. 2009. Removal of Anionic Surfactants from Wastewater Using a Constructed Wetland. Chemistry & Biodiversity 6: 1350 - 1363.

Shabarova, T., M. M. Salcher, P. Porcal, J. Nedoma, P. Znachor, H. - P. Grossart, J. Seďa, J. Hejzlar, and K. Šimek. 2021. Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. Nature Microbiology 6: 479–488.

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, and M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.