Biblio

Hahn, M. W., V. Kasalicky, J. Jezbera, U. Brandt, and K. Šimek. 2010. Limnohabitans australis sp. nov., isolated from a freshwater. J. Syst. Evol. Microbiol 60: 2946 - 2950.

Hahn, M. W., V. Kasalicky, J. Jezbera, U. Brandt, J. Jezberova, and K. Šimek. 2010. Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 60: 1358-1365.

Jezberova, J., J. Jezbera, P. Znachor, J. Nedoma, V. Kasalicky, and K. Šimek. 2017. Limnohabitans genus harbor generalist and opportunist genotype groups: evidence from spatiotemporal succession in a canyon-shaped reservoir. Appl. Environ. Microbiol. 83: e01530-17.

Kasalicky, V., J. Jezbera, K. Šimek, and M. W. Hahn. 2010. Limnohabitans planktonicus sp. nov., and Limnohabitans parvus sp. nov., two novel planktonic Betaproteobacteria isolated from a freshwater reservoir. International Journal of Systematic and Evolutionary Microbiology 60: 2710 - 2714.

Vrba, J., J. Kopacek, V. Straskrabova, J. Hejzlar, and K. Šimek. 1996. Limnological research of acidified lakes in Czech part of the Sumava Mountains: trophic status and dominance of microbial food webs. Silva Gabreta 1: 151 - 164.

Hejzlar, J., J. Kopacek, J. Vrba, H. Cizkova, J. Komarkova, and K. Šimek. 1996. Limnological study of Plesne Lake in 1994-1995. Silva Gabreta 2: 155 - 174.

Hejzlar, J., J. Kopacek, J. Vrba, H. Cizkova, J. Komarkova, and K. Šimek. 1998. Limnological study of Plešné Lake in 1994-1995. Silva Gabreta 2: 155-174.

Jezbera, J., J. Nedoma, and K. Šimek. 2003. Longitudinal changes in protistan bacterivory and bacterial production in two canyon-shaped reservoirs of different trophic status. Hydrobiologia 504: 115-130.

Straskrabova, V., Z. Brandl, J. Hrbacek, J. Komarkova, J. Seda, M. Straskraba, and K. Šimek. 1998. Long-term changes of bacteria, phytoplankton and zooplankton: Temporal coherence between deep stratified reservoirs. International Review of Hydrobiology 83: 21–30.

Straskrabova, V., K. Šimek, and J. Vrba. 2005. Long-term development of reservoir ecosystems - changes in pelagic food webs and their microbial component. Limnetica 24: 9 - 20.

2016. Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions. ISME Journal 10: 568-581.

Vrba, J., J. Nedoma, L. Kohout, J. Kopacek, L. Nedbalova, P. Rackova, and K. Šimek. 2003. Massive occurrence of heterotrophic filaments in acidified lakes: seasonal dynamics and composition. FEMS Microbiology Ecology 46: 281–294.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, J. Vrba, V. Straskrabova, M. Macek, J. R. Dolan, and M. W. Hahn. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology 8: 1613–1624.

Straskrabova, V., and K. Šimek. 1988. Measurement of biomass and activity in relation to structure and function of microbial communities in plankton. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 31: 55-60.

Groben, R., M. W. Hahn, K. Hornak, J. Mergeay, K. Šimek, and J. Vrba. 2007. Meeting report: ALTER-net workshop about the "application of molecular techniques to study biodiversity, structure and function of planktonic communities in lakes’’ at Blanes, Spain, February 15-16, 2007. Protist 158: 417-421.

Matoušů, A., R. Osudar, K. Šimek, and I. Bussmann. 2017. Methane distribution and methane oxidation in the water column of the Elbe estuary, Germany. Aquatic Sciences 79: 443-458.

Straskrabova, V., J. Komarkova, M. Macek, J. Seda, K. Šimek, J. Vrba, and V. Vyhnalek. 1993. Microbial algal crustacean interactions in a reservoir under different fishstock. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 40: 209–221.

Vrba, J., J. Nedoma, K. Šimek, and J. Seda. 1992. Microbial decomposition of polymer organic matter related to plankton development in a reservoir - activity of alpha-glucosidase, beta-glucosidase, and beta-N-acetylglucosaminidase and uptake of N-acetylglucosamine. Archiv für Hydrobiologie 126: 193–211.

Šimek, K., D. Babenzien, T. Bittl, R. Koschel, M. Macek, J. Nedoma, and J. Vrba. 1998. Microbial food webs in an artificially divided acidic bog lake. International Review of Hydrobiology 83: 3–18.

Šimek, K., V. Grujčić, J. Nedoma, J. Jezberova, M. Sorf, A. Matoušů, L. Pechar, T. Posch, E. P. Bruni, and J. Vrba. 2019. Microbial food webs in hypertrophic fishponds: omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography 64: 2295–2309.

Straskrabova, V., and K. Šimek. 1993. Microbial loop in lakes and reservoirs related to trophy and metazooplankton development A. Sladeckova [ed.]. INTERNATIONAL ASSOCIATION OF THEORETICAL AND APPLIED LIMNOLOGY - PROCEEDINGS, VOL 25 PT 2 25: 1183-1186.

Straskrabova, V., J. Komarkova, M. Macek, J. Seda, K. Šimek, J. Vrba, and V. Vyhnalek. 1994. Microbial-algal-crustacean interactions in a reservoir under different fishstock. ADVANCES IN LIMNOLOGY, VOL 40 - PROCEEDINGS OF THE SECOND INTERNATIONAL CONFERENCE ON RESERVOIR LIMNOLOGY AND WATER QUALITY 40: 209-221.

Straskrabova, V., K. Šimek, and J. Komarkova. 1990. Modeling the seasonal changes of epilimnetic bacteria on the basis of phytoplankton and zooplankton dynamics. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 34: 229-235.

Salcher, M. M., J. Hofer, K. Hornak, J. Jezbera, B. Sonntag, J. Vrba, K. Šimek, and T. Posch. 2007. Modulation of microbial predator-prey dynamics by phosphorus availability: Growth patterns and survival strategies of bacterial phylogenetic clades. FEMS Microbiology Ecology 60: 40–50.

Šimek, K., J. Vrba, J. Pernthaler, T. Posch, P. Hartman, J. Nedoma, and R. Psenner. 1997. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Applied and Environmental Microbiology 63: 587–595.