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Choma, M., J. Bárta, H. Santruckova, and T. Urich. 2016. Low abundance of Archaeorhizomycetes among fungi in soil metatranscriptomes.

Choma, M., M. O. Rappe-George, J. Bárta, P. Čapek, E. Kaštovská, A. I. Gärdenäs, and H. Santruckova. 2017. Recovery of the ectomycorrhizal community after termination of long-term nitrogen fertilisation of a boreal Norway spruce forest. FUNGAL ECOLOGY 29: 116-122.

Choma, M., K. Tahovská, E. Kaštovská, J. Bárta, M. Růžek, and F. Oulehle. 2020. Bacteria but not fungi respond to soil acidification rapidly and consistently in both a spruce and beech forest. FEMS Microbiology Ecology 96: fiaa174.

Choma, M., P. Šamonil, E. Kaštovská, J. Bárta, K. Tahovská, M. Valtera, and H. Santruckova. 2021. Soil Microbiome Composition along the Natural Norway Spruce Forest Life Cycle. Forests 12: 410.