Biblio

Gabaldón, C., M. Devetter, J. Hejzlar, K. Šimek, P. Znachor, J. Nedoma, and J. Seda. 2017. : Repeated flood disturbance enhances rotifer dominance and diversity in a zooplankton community of a small dammed mountain pond. J. Limnol. 76: 292-304.

Shabarova, T., M. M. Salcher, P. Porcal, J. Nedoma, P. Znachor, H. - P. Grossart, J. Seďa, J. Hejzlar, and K. Šimek. 2021. Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. Nature Microbiology 6: 479–488.

Dolan, J. R., and K. Šimek. 1997. Processing of ingested matter in Strombidium sulcatum, a marine ciliate (Oligotrichida). Limnology and Oceanography 42: 393-397.

Grujčić, V., V. Kasalicky, and K. Šimek. 2015. Prey-specific growth responses of freshwater flagellate communities induced by morphologically distinct bacteria from the genus Limnohabitans. Applied and Environmental Microbiology 81: 4993–5002.

Chrzanowski, T. H., and K. Šimek. 1990. Prey-size selection by fresh-water flagellated protozoa. Limnology and Oceanography 35: 1429-1436.

Jezbera, J., K. Hornak, and K. Šimek. 2006. Prey selectivity of bacterivorous protists in different size fractions of reservoir water amended with nutrients. Environmental Microbiology 8: 1330-1339.

Pernthaler, J., T. Posch, K. Šimek, J. Vrba, A. Pernthaler, F. O. Glockner, U. Nubel, R. Psenner, and R. Amann. 2001. Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Applied and Environmental Microbiology 67: 2145–2155.

Posch, T., K. Šimek, J. Vrba, S. Pernthaler, J. Nedoma, B. Sattler, B. Sonntag, and R. Psenner. 1999. Predator-induced changes of bacterial size-structure and productivity studied on an experimental microbial community. Aquatic Microbial Ecology 18: 235–246.

Šimek, K., M. Macek, J. Seda, and V. Vyhnalek. 1990. Possible food chain relationships between bacterioplankton, protozoans and cladocerans in a reservoir. Internationale Revue der Gesamten Hydrobiologie 75: 583-596.

Weinbauer, M. G., J. R. Dolan, and K. Šimek. 2015. A population of giant tailed virus-like particles associated with heterotrophic flagellates in a lake-type reservoir. Aquatic Microbial Ecology 76: 111-116.

Comerma, M., J. - C. Garcia, J. Armengol, M. Romero, and K. Šimek. 2001. Planktonic food web structure along the Sau Reservoir (Spain) in summer 1997. International Review of Hydrobiology 86: 195-209.

Straskrabova, V., J. Nedoma, K. Šimek, and J. Vrba. 2003. Pelagic microbial assemblages in oligotrophic mountain lakes. Acta Universitatis Ecologiae 10: 15 - 17.

Straskrabova, V., K. Šimek, M. Macek, P. Hartman, J. Fott, and M. Blazo. 2000. Pelagic food webs and microbial loop in mountain lakes sensitive to acidification W.D. Williams [ed.]. INTERNATIONAL ASSOCIATION OF THEORETICAL AND APPLIED LIMNOLOGY, VOL 27, PT 1, PROCEEDINGS 27: 513-516.

Jezbera, J., J. Jezberova, V. Kasalicky, K. Šimek, and M. W. Hahn. 2013. Patterns of Limnohabitans microdiversity across a large set of freshwater habitats as revealed by Reverse Line Blot Hybridization. PLoS ONE 8: e58527.

Hahn, M. W., T. Scheuerl, J. Jezberova, U. Koll, J. Jezbera, K. Šimek, C. Vannini, G. Petroni, and Q. L. Wu. 2012. The Passive Yet Successful Way of Planktonic Life: Genomic and Experimental Analysis of the Ecology of a Free-Living Polynucleobacter Population. PLoS ONE 7: e32772.

Šimek, K. 1982. The occurrence of faecal bacteria in a fish pond with a duck farm. Internationale Revue Der Gesamten Hydrobiologie 67: 851-868.

Nedoma, J., J. Vrba, J. Hejzlar, K. Šimek, and V. Straskrabova. 1994. N-acetylglucosamine dynamics in freshwater environment: concentration of amino-sugars, extracellular enzyme activities, and microbial uptake. Limnology and Oceanography 39: 1088-1100.

Šimek, K., J. Vrba, J. Pernthaler, T. Posch, P. Hartman, J. Nedoma, and R. Psenner. 1997. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Applied and Environmental Microbiology 63: 587–595.

Salcher, M. M., J. Hofer, K. Hornak, J. Jezbera, B. Sonntag, J. Vrba, K. Šimek, and T. Posch. 2007. Modulation of microbial predator-prey dynamics by phosphorus availability: Growth patterns and survival strategies of bacterial phylogenetic clades. FEMS Microbiology Ecology 60: 40–50.

Straskrabova, V., K. Šimek, and J. Komarkova. 1990. Modeling the seasonal changes of epilimnetic bacteria on the basis of phytoplankton and zooplankton dynamics. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 34: 229-235.

Straskrabova, V., J. Komarkova, M. Macek, J. Seda, K. Šimek, J. Vrba, and V. Vyhnalek. 1994. Microbial-algal-crustacean interactions in a reservoir under different fishstock. ADVANCES IN LIMNOLOGY, VOL 40 - PROCEEDINGS OF THE SECOND INTERNATIONAL CONFERENCE ON RESERVOIR LIMNOLOGY AND WATER QUALITY 40: 209-221.

Straskrabova, V., and K. Šimek. 1993. Microbial loop in lakes and reservoirs related to trophy and metazooplankton development A. Sladeckova [ed.]. INTERNATIONAL ASSOCIATION OF THEORETICAL AND APPLIED LIMNOLOGY - PROCEEDINGS, VOL 25 PT 2 25: 1183-1186.

Šimek, K., V. Grujčić, J. Nedoma, J. Jezberova, M. Sorf, A. Matoušů, L. Pechar, T. Posch, E. P. Bruni, and J. Vrba. 2019. Microbial food webs in hypertrophic fishponds: omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography 64: 2295–2309.

Šimek, K., D. Babenzien, T. Bittl, R. Koschel, M. Macek, J. Nedoma, and J. Vrba. 1998. Microbial food webs in an artificially divided acidic bog lake. International Review of Hydrobiology 83: 3–18.

Vrba, J., J. Nedoma, K. Šimek, and J. Seda. 1992. Microbial decomposition of polymer organic matter related to plankton development in a reservoir - activity of alpha-glucosidase, beta-glucosidase, and beta-N-acetylglucosaminidase and uptake of N-acetylglucosamine. Archiv für Hydrobiologie 126: 193–211.