Biblio

Kristufek, V., K. Šimek, B. Grunda, and P. Puncochar. 1987. Use of nitrocellulose Synpor filters for counting soil bacteria by epifluorescence microscopy. Folia Microbiologica 32: 349-353.

Šimek, K., M. Macek, and V. Vyhnalek. 1990. Uptake of bacteria-sized fluorescent particles by natural protozoan assemblage in a reservoir. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 34: 276-281.

Eiler, A., S. Drakare, S. Bertilsson, J. Pernthaler, S. Peura, C. Rofner, K. Šimek, Y. Yang, P. Znachor, and E. S. Lindstrom. 2013. Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach. PLoS ONE 8: e53516.

Komarkova, J., and K. Šimek. 2003. Unicellular and colonial formations of picoplanktonic cyanobacteria under variable environmental conditions and predation pressure. Archiv für Hydrobiologie Algological Studies 109: 327-340.

Prokopchuk, G., T. Korytář, V. Juricová, J. Majstorović, A. Horák, K. Šimek, and J. Lukeš. 2022. Trophic flexibility of marine diplonemids - switching from osmotrophy to bacterivory. ISME Journal , doi:10.1038/s41396-022-01192-0

Gasol, J. M., M. Comerma, J. - C. Garcia, J. Armengol, E. O. Casamayor, P. Kojecka, and K. Šimek. 2002. A transplant experiment to identify the factors controlling bacterial abundance, activity, production, and community composition in a eutrophic canyon-shaped reservoir. Limnology and Oceanography 47: 62-77.

Straskrabova, V., and K. Šimek. 1984. Total and individual cell uptake of organic substances as a measure of activity of bacterioplankton. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 19: 1-6.

Pernthaler, J., B. Sattler, K. Šimek, A. Schwarzenbacher, and R. Psenner. 1996. Top-down effects on the size-biomass distribution of a freshwater bacterioplankton community. Aquatic Microbial Ecology 10: 255-263.

Grossart, H. - P., J. Jezbera, K. Hornak, K. Michelle L. Hutalle, U. Buck, and K. Šimek. 2008. Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake. Environmental Microbiology 10: 635-652.

Weinbauer, M. G., K. Hornak, J. Jezbera, J. Nedoma, J. R. Dolan, and K. Šimek. 2007. Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity. Environmental Microbiology 9: 777-788.

Weinbauer, M. G., O. Bonilla-Findji, A. M. Chan, J. R. Dolan, S. M. Short, K. Šimek, S. W. Wilhelm, and C. A. Suttle. 2011. Synechococcus growth in the ocean may depend on the lysis of heterotrophic bacteria. J. Plankton Res 33: 1465-1476.

Bednařík, A., A. Matoušů, M. Blaser, M. Tušer, M. Rulík, K. Šimek, and P. P. Chaudhary. 2019. Study of methane-related processes in sediments along the longitudinal profile of the Elbe River. Limnologica 79: 125716.

Straskrabova, V., J. Fott, P. Hartman, M. Macek, J. Nedoma, K. Šimek, and J. Vrba. 2000. Structure of pelagic food webs in low-alkalinity lakes - forested and alpine catchments. Silva Gabreta 4: 199 - 211.

Bettarel, Y., J. R. Dolan, K. Hornak, R. Lemee, M. Masin, M. L. Pedrotti, E. Rochelle-Newall, K. Šimek, and T. Sime-Ngando. 2002. Strong, weak and missing links in a microbial community of the NW Mediterranean Sea. FEMS Microbiology Ecology 42: 451–462.

Hornak, K., V. Kasalicky, K. Šimek, and H. - P. Grossart. 2017. Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans-C and Polynucleobacter-B clusters of Betaproteobacteria. Environ. Microbiol. 19: 4519–4535.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, P. Znachor, J. Hejzlar, and J. Seda. 2008. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology 51: 249-262.

Šimek, K., J. Vrba, and P. Hartman. 1994. Size-selective feeding by Cyclidium sp. on bacterioplankton and various sizes of cultured bacteria. FEMS Microbiology Ecology 14: 157–167.

Posch, T., J. Jezbera, J. Vrba, K. Šimek, J. Pernthaler, S. Andreatta, and B. Sonntag. 2001. Size selective feeding in Cyclidium glaucoma (Ciliophora, Scuticociliatida) and its effects on bacterial community structure: A study from a continuous cultivation system. Microbial Ecology 42: 217–227.

Pernthaler, J., K. Šimek, B. Sattler, A. Schwarzenbacher, J. Bobkova, and R. Psenner. 1996. Short-term changes of protozoan control on autotrophic picoplankton in an oligo-mesotrophic lake. Journal of Plankton Research 18: 443-462.

Šimek, K., P. Kojecka, J. Nedoma, P. Hartman, J. Vrba, and J. R. Dolan. 1999. Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir. Limnology and Oceanography 44: 1634–1644.

Montagnes, D. J. S., A. B. Barbosa, J. Boenigk, K. Davidson, K. Juergens, M. Macek, J. D. Parry, E. C. Roberts, and K. Šimek. 2008. Selective feeding behaviour of key free-living protists: avenues for continued study. Aquatic Microbial Ecology 53: 83-98.

Macek, M., C. Callieri, K. Šimek, and A. Lugo Vazquez. 2006. Seasonal dynamics, composition and feeding patterns of ciliate assemblages in oligotrophic lakes covering a wide pH range. Archiv für Hydrobiologie 166: 261-287.

Šimek, K., J. Jezbera, K. Hornak, J. Vrba, and J. Seda. 2004. Role of diatom-attached choanoilagellates of the genus Salpingoeca as pelagic bacterivores. Aquatic Microbial Ecology 36: 257–269.

Šimek, K., and J. Fuksa. 1989. Responses in bacterial activity to changing conditions in plankton - probable controlling mechanisms. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 33: 239-248.

Allers, E., L. Gomez-Consarnau, J. Pinhassi, J. M. Gasol, K. Šimek, and J. Pernthaler. 2007. Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environmental Microbiology 9: 2417–2429.