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Kana, J., J. Kopacek, K. Tahovska, and H. Santruckova. 2019. Tree dieback and related changes in nitrogen dynamics modify the concentrations and proportions of cations on soil sorption complex. Ecological Indicators 97: 319–328.

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Svobodova, J., J. Matena, J. Kopacek, S. Polakova, and J. Vrba. 2012. Spatial and temporal changes of benthic macroinvertebrate assemblages in acidified streams in the Bohemian Forest (Czech Republic). AQUATIC INSECTS 34: 157-172.

Porcal, P., A. Amirbahman, J. Kopacek, and S. A. Norton. 2020. Solar Radiation as the Likely Cause of Acid-Soluble Rare-Earth Elements in Sediments of Fresh Water Humic Lakes. Environ. Sci. Technol. 54: 1545-1553.

Santruckova, H., J. Vrba, T. Picek, and J. Kopacek. 2004. Soil biochemical activity and phosphorus transformations and losses from acidified forest soils. Soil Biology & Biochemistry 36: 1569–1576.

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Kana, J., K. Tahovska, and J. Kopacek. 2013. Response of soil chemistry to forest dieback after bark beetle infestation. Biogeochemistry 113: 369–383.

Matena, J., V. Matenova, P. Blabolil, J. Kopacek, J. Peltanova, M. Sorf, J. Žaloudík, and J. Vrba. 2017. Recovery of brown trout populations in streams exposed to atmospheric acidification in the Bohemian Forest. Folia Zoologica 66: 1-10.

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Kopacek, J., J. Kana, and H. Santruckova. 2006. Pools and composition of soils in the alpine zone of the Tatra Mountains. Biologia 61: S35-S49.

Porcal, P., and J. Kopacek. 2018. Photochemical degradation of dissolved organic matter reduces the availability of phosphorus for aquatic primary producers. Chemosphere 193: 1018-1026.

Porcal, P., K. Frejlachova, J. Kopacek, J. Nedoma, and T. Šavrdová. 2017. Photochemical cleaving of allochthonous organic-metal complexes contributes to phosphorus immobilization in surface waters. Chemosphere 167: 374-381.

Kopacek, J., J. Hejzlar, J. Vrba, and E. Stuchlik. 2011. Phosphorus loading of mountain lakes: Terrestrial export and atmospheric deposition. LIMNOLOGY AND OCEANOGRAPHY 56: 1343-1354.

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Ctvrtlikova, M., J. Kopacek, J. Nedoma, P. Znachor, and J. Vrba. 2020. Only the adults survive – A long-term resistance of Isoëtes lacustris to acidity and aluminium toxicity stress in a Bohemian Forest lake. Ecological Indicators 111: 106026.

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Kopacek, J., M. Brzakova, J. Hejzlar, J. Nedoma, P. Porcal, and J. Vrba. 2004. Nutrient cycling in a strongly acidified mesotrophic lake. Limnology and Oceanography 49: 1202-1213.

Santruckova, H., K. Tahovska, and J. Kopacek. 2009. Nitrogen transformations and pools in N-saturated mountain spruce forest soils. Biology and Fertility of Soils 45: 395–404.

Kopacek, J., B. J. Cosby, C. D. Evans, J. Hruska, F. Moldan, F. Oulehle, K. Tahovska, and R. F. Wright. 2013. Nitrogen, organic carbon and sulphur cycling in terrestrial ecosystems: linking nitrogen saturation to carbon limitation of soil microbial processes. BIOGEOCHEMISTRY 115: 33-51.

Tahovska, K., H. Santruckova, and J. Kopacek. 2010. Nitrogen availability in Norway spruce forest floor - the effect of forest defoliation induced by bark beetle infestation. BOREAL ENVIRONMENT RESEARCH 15: 553-564.

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Znachor, P., J. Nedoma, J. Hejzlar, J. Seda, J. Kopacek, David S. Boukal, and T. Mrkvička. 2018. Multiple long-term trends and trend reversals dominate environmental conditions in a man-made freshwater reservoir. Science of the Total Environment , doi:10.1016/j.scitotenv.2017.12.061

Tahovska, K., P. Čapek, J. Kana, J. Kopacek, and H. Santruckova. 2016. Measurement of in situ phosphorus availability in acidified soils using iron infused resin. Communications in Soil Science and Plant Analysis 47: 487 - 494.

Vrba, J., J. Nedoma, L. Kohout, J. Kopacek, L. Nedbalova, P. Rackova, and K. Šimek. 2003. Massive occurrence of heterotrophic filaments in acidified lakes: seasonal dynamics and composition. FEMS Microbiology Ecology 46: 281–294.

Kopacek, J., M. Brzakova, J. Hejzlar, J. Kana, P. Porcal, and J. Vrba. 2003. Mass balance of nutrients and major solutes in the Plesne watershed - lake ecosystem in the 2001 hydrological year. Silva Gabreta 9: 33 - 52.

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Vrba, J., J. Kopacek, J. Fott, L. Kohout, L. Nedbalova, M. Prazakova, T. Soldan, and J. Schaumburg. 2003. Long-term studies (1871-2000) on acidification and recovery of lakes in the Bohemian Forest (central Europe). Science of the Total Environment 310: 73–85.

Vrba, J., J. Kopacek, and J. Fott. 2000. Long-term limnological research of the Bohemian Forest lakes and their recent status. Silva Gabreta 4: 7 - 27.

Vrba, J., J. Kopacek, K. Tahovska, and H. Santruckova. 2015. Long-term ecological research of glacial lakes in the Bohemian Forest and their catchments. Silva Gabreta 21: 53-71.

Vrba, J., J. Fott, L. Kohout, J. Kopacek, M. Macek, and L. Nedbalova. 2008. Limnological survey of the lakes Wielki Staw and Maly Staw in the Giant Mts. (Karkonosze). Opera Concortica 45: 45 - 58.

Hejzlar, J., J. Kopacek, J. Vrba, H. Cizkova, J. Komarkova, and K. Šimek. 1998. Limnological study of Plešné Lake in 1994-1995. Silva Gabreta 2: 155-174.

Hejzlar, J., J. Kopacek, J. Vrba, H. Cizkova, J. Komarkova, and K. Šimek. 1996. Limnological study of Plesne Lake in 1994-1995. Silva Gabreta 2: 155 - 174.