Biblio

Posch, T., J. Jezbera, J. Vrba, K. Šimek, J. Pernthaler, S. Andreatta, and B. Sonntag. 2001. Size selective feeding in Cyclidium glaucoma (Ciliophora, Scuticociliatida) and its effects on bacterial community structure: A study from a continuous cultivation system. Microbial Ecology 42: 217–227.

Masin, M., J. Jezbera, J. Nedoma, V. Straskrabova, J. Hejzlar, and K. Šimek. 2003. Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading. Hydrobiologia 504: 99-113.

Jezbera, J., J. Nedoma, and K. Šimek. 2003. Longitudinal changes in protistan bacterivory and bacterial production in two canyon-shaped reservoirs of different trophic status. Hydrobiologia 504: 115-130.

Šimek, K., J. Jezbera, K. Hornak, J. Vrba, and J. Seda. 2004. Role of diatom-attached choanoilagellates of the genus Salpingoeca as pelagic bacterivores. Aquatic Microbial Ecology 36: 257–269.

Hornak, K., M. Masin, J. Jezbera, Y. Bettarel, J. Nedoma, T. Sime-Ngando, and K. Šimek. 2005. Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiology Ecology 52: 315-327.

Jezbera, J., K. Hornak, and K. Šimek. 2005. Food selection by bacterivorous protists: insight from the analysis of the food vacuole content by means of Fluorescence In Situ Hybridization. FEMS Microbiology Ecology 52: 351-363.

Šimek, K., K. Hornak, J. Jezbera, M. Masin, J. Nedoma, J. M. Gasol, and M. Schauer. 2005. Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of beta-proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Applied And Environmental Microbiology 71: 2381-2390.

Hornak, K., J. Jezbera, J. Nedoma, J. M. Gasol, and K. Šimek. 2006. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquatic Microbial Ecology 45: 277-289.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, J. Vrba, V. Straskrabova, M. Macek, J. R. Dolan, and M. W. Hahn. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology 8: 1613–1624.

Jezbera, J., K. Hornak, and K. Šimek. 2006. Prey selectivity of bacterivorous protists in different size fractions of reservoir water amended with nutrients. Environmental Microbiology 8: 1330-1339.

Posch, T., B. Mindl, K. Hornak, J. Jezbera, M. M. Salcher, B. Sattler, B. Sonntag, J. Vrba, and K. Šimek. 2007. Biomass reallocation within freshwater bacterioplankton induced by manipulating phosphorus availability and grazing. Aquatic Microbial Ecology 49: 223–232.

Šimek, K., M. G. Weinbauer, K. Hornak, J. Jezbera, J. Nedoma, and J. R. Dolan. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology 9: 789-800.

Salcher, M. M., J. Hofer, K. Hornak, J. Jezbera, B. Sonntag, J. Vrba, K. Šimek, and T. Posch. 2007. Modulation of microbial predator-prey dynamics by phosphorus availability: Growth patterns and survival strategies of bacterial phylogenetic clades. FEMS Microbiology Ecology 60: 40–50.

Weinbauer, M. G., K. Hornak, J. Jezbera, J. Nedoma, J. R. Dolan, and K. Šimek. 2007. Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity. Environmental Microbiology 9: 777-788.

Hornak, K., J. Jezbera, and K. Šimek. 2008. Effects of a Microcystis aeruginosa bloom and bacterivory on bacterial abundance and activity in a eutrophic reservoir. Aquatic Microbial Ecology 52: 107-117.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, P. Znachor, J. Hejzlar, and J. Seda. 2008. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology 51: 249-262.

Grossart, H. - P., J. Jezbera, K. Hornak, K. Michelle L. Hutalle, U. Buck, and K. Šimek. 2008. Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake. Environmental Microbiology 10: 635-652.

Tanaka, T., F. T. Thingstad, J. M. Gasol, C. Cardelus, J. Jezbera, M. M. Sala, K. Šimek, and F. Unrein. 2009. Determining the availability of phosphate and glucose for bacteria in P-limited mesocosms of NW Mediterranean surface waters. Aquatic Microbial Ecology 56: 81-91.

Hornak, K., J. Jezbera, and K. Šimek. 2010. Bacterial single-cell activities along the nutrient availability gradient in a canyon-shaped reservoir - a seasonal study. Aquatic Microbial Ecology 60: 215-225.

Šimek, K., V. Kasalicky, J. Jezbera, J. Jezberova, J. Hejzlar, and M. W. Hahn. 2010. Broad habitat range of the phylogenetically narrow R-BT065 cluster representing a core group of the betaproteobacterial genus Limnohabitans. Applied and Environmental Microbiology 76: 631-639.

Hahn, M. W., V. Kasalicky, J. Jezbera, U. Brandt, and K. Šimek. 2010. Limnohabitans australis sp. nov., isolated from a freshwater. J. Syst. Evol. Microbiol 60: 2946 - 2950.

Hahn, M. W., V. Kasalicky, J. Jezbera, U. Brandt, J. Jezberova, and K. Šimek. 2010. Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 60: 1358-1365.

Kasalicky, V., J. Jezbera, K. Šimek, and M. W. Hahn. 2010. Limnohabitans planktonicus sp. nov., and Limnohabitans parvus sp. nov., two novel planktonic Betaproteobacteria isolated from a freshwater reservoir. International Journal of Systematic and Evolutionary Microbiology 60: 2710 - 2714.

Jezbera, J., J. Jezberova, U. Koll, K. Hornak, K. Šimek, and M. W. Hahn. 2012. Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467-479.

Hahn, M. W., T. Scheuerl, J. Jezberova, U. Koll, J. Jezbera, K. Šimek, C. Vannini, G. Petroni, and Q. L. Wu. 2012. The Passive Yet Successful Way of Planktonic Life: Genomic and Experimental Analysis of the Ecology of a Free-Living Polynucleobacter Population. PLoS ONE 7: e32772.