Biblio

Shabarova, T., M. M. Salcher, P. Porcal, J. Nedoma, P. Znachor, H. - P. Grossart, J. Seďa, J. Hejzlar, and K. Šimek. 2021. Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. Nature Microbiology 6: 479–488.

Znachor, P., J. Nedoma, J. Hejzlar, M. Seďa, J. Komarkova, V. Kolář, T. Mrkvička, and D. S. Boukal. 2020. Changing environmental conditions underpin long-term patterns of phytoplankton in a freshwater reservoir. Science of The Total Environment 710: 135626.

Ctvrtlikova, M., J. Kopacek, J. Nedoma, P. Znachor, and J. Vrba. 2020. Only the adults survive – A long-term resistance of Isoëtes lacustris to acidity and aluminium toxicity stress in a Bohemian Forest lake. Ecological Indicators 111: 106026.

Šimek, K., V. Grujčić, J. Nedoma, J. Jezberova, M. Sorf, A. Matoušů, L. Pechar, T. Posch, E. P. Bruni, and J. Vrba. 2019. Microbial food webs in hypertrophic fishponds: omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography 64: 2295–2309.

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, and T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759

Vrba, J., M. Macholdová, L. Nedbalova, J. Nedoma, and M. Sorf. 2018. An experimental insight into extracellular phosphatases – differential induction of cell-specific activity in green algae cultured under various phosphorus conditions. Frontiers in Microbiology 9, doi:10.3389/fmicb.2018.00271

Znachor, P., J. Nedoma, J. Hejzlar, J. Seda, J. Kopacek, David S. Boukal, and T. Mrkvička. 2018. Multiple long-term trends and trend reversals dominate environmental conditions in a man-made freshwater reservoir. Science of the Total Environment , doi:10.1016/j.scitotenv.2017.12.061

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, and M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.

Jezberova, J., J. Jezbera, P. Znachor, J. Nedoma, V. Kasalicky, and K. Šimek. 2017. Limnohabitans genus harbor generalist and opportunist genotype groups: evidence from spatiotemporal succession in a canyon-shaped reservoir. Appl. Environ. Microbiol. 83: e01530-17.

Porcal, P., K. Frejlachova, J. Kopacek, J. Nedoma, and T. Šavrdová. 2017. Photochemical cleaving of allochthonous organic-metal complexes contributes to phosphorus immobilization in surface waters. Chemosphere 167: 374-381.

Gabaldón, C., M. Devetter, J. Hejzlar, K. Šimek, P. Znachor, J. Nedoma, and J. Seda. 2017. : Repeated flood disturbance enhances rotifer dominance and diversity in a zooplankton community of a small dammed mountain pond. J. Limnol. 76: 292-304.

Ctvrtlikova, M., J. Hejzlar, J. Vrba, J. Kopacek, J. Nedoma, P. Hekera, A. J. Wade, and S. Roy. 2016. Lake water acidification and temperature have a lagged effect on the population dynamics of Isoëtes echinospora via offspring recruitment. Ecological Indicators 70: 420-430.

Šimek, K., J. Nedoma, P. Znachor, V. Kasalicky, J. Jezbera, K. Hornak, and J. Seda. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, and J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Ctvrtlikova, M., P. Znachor, J. Nedoma, and J. Vrba. 2012. Effects of temperature on the phenology of germination of Isoetes echinospora. PRESLIA 84: 141-153.

Šimek, K., M. Comerma, J. C. García, R. Marcé, J. Nedoma, and J. Armengol. 2011. The effect of river water circulation on the distribution and functioning of reservoir microbial communities as determined by a relative distance approach. Ecosystems 14: 1–14.

Strojsova, M., J. Nedoma, J. Seda, and J. Vrba. 2008. Diet quality impact on growth, reproduction and digestive activity in Brachionus calyciflorus. Journal of Plankton Research 30: 1123–1131.

Nedoma, J., M. Strojsova, X. Cao, and J. Vrba. 2008. The role of cell-surface-bound phosphatases in species competition within natural phytoplankton assemblage: an in situ experiment. JOURNAL OF LIMNOLOGY 67: 128-138.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, P. Znachor, J. Hejzlar, and J. Seda. 2008. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology 51: 249-262.

Šimek, K., M. G. Weinbauer, K. Hornak, J. Jezbera, J. Nedoma, and J. R. Dolan. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology 9: 789-800.

Weinbauer, M. G., K. Hornak, J. Jezbera, J. Nedoma, J. R. Dolan, and K. Šimek. 2007. Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity. Environmental Microbiology 9: 777-788.

Hornak, K., J. Jezbera, J. Nedoma, J. M. Gasol, and K. Šimek. 2006. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquatic Microbial Ecology 45: 277-289.

Nedoma, J., J. - C. Garcia, M. Comerma, K. Šimek, and J. Armengol. 2006. Extracellular phosphatases in a Mediterranean reservoir: seasonal, spatial and kinetic heterogeneity. Freshwater Biology 51: 1264-1276.

Vrba, J., J. Kopacek, T. Bittl, J. Nedoma, A. Strojsova, L. Nedbalova, L. Kohout, and J. Fott. 2006. A key role of aluminium in phosphorus availability, food web structure, and plankton dynamics in strongly acidified lakes. Biologia 61: S441–S451.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, J. Vrba, V. Straskrabova, M. Macek, J. R. Dolan, and M. W. Hahn. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology 8: 1613–1624.