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Vrba, J., K. Šimek, J. Nedoma, a P. Hartman. 1993. 4-methylumbelliferyl-beta-N-acetylglucosaminide hydrolysis by a high-affinity enzyme, a putative marker of protozoan bacterivory. Applied and Environmental Microbiology 59: 3091–3101.

A

Kubečka, J., J. Matena, a P. Hartvich. 1997. Adverse ecological effects of small hydropower stations in the Czech Republic .1. Bypass plants. Regulated Rivers-research & Management 13: 101-113.

Paca, J., M. Halecky, J. Bárta, a R. Bajpai. 2009. Aerobic biodegradation of 2,4-DNT and 2,6-DNT: Performance characteristics and biofilm composition changes in continuous packed-bed bioreactors. Journal of Hazardous Materials 163: 6.

Blom, J. F., K. Hornak, a K. Šimek. 2010. Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues. Environmental Microbiology 12: 2486-2495.

Šimek, K., V. Kasalicky, E. Zapomelova, a K. Hornak. 2011. Algal-derived substrates select for distinct betaproteobacterial lineages and contribute to niche separation in Limnohabitans strains. Appl. Environ. Microbiol. 77: 7307-7315.

Sima, J., V. Holcova, J. Dusek, a K. Diakova. 2006. Analytical approach to study of redox properties of constructed wetland. CHEMICKE LISTY 100: 911 - 918.

Nweze, J. Amuche, F. Nwakaego Mbaoji, G. Huang, Y. Li, L. Yang, Y. Zhang, S. Huang, L. Pan, a D. Yang. 2020. Antibiotics development and the potentials of marine-derived compounds to stem the tide of multidrug-resistant pathogenic bacteria, fungi, and protozoa. Marine Drugs 18: 145.

Nweze, J. Amuche, F. Nwakaego Mbaoji, G. Huang, Y. Li, L. Yang, Y. Zhang, S. Huang, L. Pan, a D. Yang. 2020. Antibiotics development and the potentials of marine-derived compounds to stem the tide of multidrug-resistant pathogenic bacteria, fungi, and protozoa. Marine Drugs 18: 145.

Gryndler, M., P. Šmilauer, D. Puschel, P. Bukovská, H. Hršelová, M. Hujslová, H. Gryndlerová, O. Beskid, T. Konvalinková, a J. Jansa. 2018. Appropriate nonmycorrhizal controls in arbuscular mycorrhiza research: a microbiome perspective. Mycorrhiza 28: 435-450.

Gryndler, M., P. Šmilauer, D. Puschel, P. Bukovská, H. Hršelová, M. Hujslová, H. Gryndlerová, O. Beskid, T. Konvalinková, a J. Jansa. 2018. Appropriate nonmycorrhizal controls in arbuscular mycorrhiza research: a microbiome perspective. Mycorrhiza 28: 435-450.

Vrba, J., C. Callieri, T. Bittl, K. Šimek, R. Bertoni, P. Filandr, P. Hartman, J. Hejzlar, M. Macek, a J. Nedoma. 2004. Are bacteria the major producers of extracellular glycolytic enzymes in aquatic environments?. International Review of Hydrobiology 89: 102–117.

Vrba, J., C. Callieri, T. Bittl, K. Šimek, R. Bertoni, P. Filandr, P. Hartman, J. Hejzlar, M. Macek, a J. Nedoma. 2004. Are bacteria the major producers of extracellular glycolytic enzymes in aquatic environments?. International Review of Hydrobiology 89: 102–117.

Šimek, K., V. Kasalicky, K. Hornak, M. W. Hahn, a M. G. Weinbauer. 2010. Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Applied and Environmental Microbiology 76: 1406–1416.

Šimek, K., V. Kasalicky, K. Hornak, M. W. Hahn, a M. G. Weinbauer. 2010. Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Applied and Environmental Microbiology 76: 1406–1416.

Pechar, L., J. Prochazka, M. Hais, E. Pecharova, M. Eiseltova, L. Bodlak, J. Sulcova, a L. Kropfelova. 2005. Assessment of landscape efficiency in matter retention in submontane agricultural catchments of the Czech Republic. Nutrient Management in Agricultural Watersheds: A Wetlands Solution 34–38.

Juza, T., G. Rakowitz, V. Drastik, P. Blabolil, A. Herzig, M. Kratochvil, M. Muska, M. Riha, Z. Sajdlova, a J. Kubečka. 2013. Avoidance reactions of fish in the trawl mouth opening in a shallow and turbid lake at night. Fisheries Research 147: 154-160.

B

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, a T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, a T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759

Hornak, K., J. Jezbera, a K. Šimek. 2010. Bacterial single-cell activities along the nutrient availability gradient in a canyon-shaped reservoir - a seasonal study. Aquatic Microbial Ecology 60: 215-225.

Kopáček, J., J. Hejzlar, P. Porcal, a P. Znachor. 2021. Biogeochemical causes of sixty-year trends and seasonal variations of river water properties in a large European basin. Biogeochemistry 154: 81–98.

Šimek, K., D. W. Hopkins, J. Kalcik, T. Picek, H. Santruckova, J. Stana, a K. Travnik. 1999. Biological and chemical properties of arable soils affected by long-term organic and inorganic fertilizer applications. Biology and Fertility of Soils 29: 300–308.

Smejkal, M., D. Ricard, M. Prchalova, M. Riha, M. Muska, P. Blabolil, M. Cech, M. Vasek, T. Juza, A. Monteoliva Herreras, L. Encina, J. Peterka, a J. Kubečka. 2015. Biomass and Abundance Biases in European Standard Gillnet Sampling. PLoS ONE 10: e0122437.

Posch, T., B. Mindl, K. Hornak, J. Jezbera, M. M. Salcher, B. Sattler, B. Sonntag, J. Vrba, a K. Šimek. 2007. Biomass reallocation within freshwater bacterioplankton induced by manipulating phosphorus availability and grazing. Aquatic Microbial Ecology 49: 223–232.

Šimek, K., V. Kasalicky, J. Jezbera, J. Jezberova, J. Hejzlar, a M. W. Hahn. 2010. Broad habitat range of the phylogenetically narrow R-BT065 cluster representing a core group of the betaproteobacterial genus Limnohabitans. Applied and Environmental Microbiology 76: 631-639.

Šimek, K., V. Kasalicky, J. Jezbera, J. Jezberova, J. Hejzlar, a M. W. Hahn. 2010. Broad habitat range of the phylogenetically narrow R-BT065 cluster representing a core group of the betaproteobacterial genus Limnohabitans. Applied and Environmental Microbiology 76: 631-639.