Biblio

Šimek, K., V. Kasalicky, J. Jezbera, J. Jezberova, J. Hejzlar, a M. W. Hahn. 2010. Broad habitat range of the phylogenetically narrow R-BT065 cluster representing a core group of the betaproteobacterial genus Limnohabitans. Applied and Environmental Microbiology 76: 631-639.

Hahn, M. W., V. Kasalicky, J. Jezbera, U. Brandt, a K. Šimek. 2010. Limnohabitans australis sp. nov., isolated from a freshwater. J. Syst. Evol. Microbiol 60: 2946 - 2950.

Hahn, M. W., V. Kasalicky, J. Jezbera, U. Brandt, J. Jezberova, a K. Šimek. 2010. Limnohabitans curvus gen. nov., sp. nov., a planktonic bacterium isolated from a freshwater lake. International Journal of Systematic and Evolutionary Microbiology 60: 1358-1365.

Kasalicky, V., J. Jezbera, K. Šimek, a M. W. Hahn. 2010. Limnohabitans planktonicus sp. nov., and Limnohabitans parvus sp. nov., two novel planktonic Betaproteobacteria isolated from a freshwater reservoir. International Journal of Systematic and Evolutionary Microbiology 60: 2710 - 2714.

Šimek, K., V. Kasalicky, E. Zapomelova, a K. Hornak. 2011. Algal-derived substrates select for distinct betaproteobacterial lineages and contribute to niche separation in Limnohabitans strains. Appl. Environ. Microbiol. 77: 7307-7315.

Šimek, K., M. Comerma, J. C. García, R. Marcé, J. Nedoma, a J. Armengol. 2011. The effect of river water circulation on the distribution and functioning of reservoir microbial communities as determined by a relative distance approach. Ecosystems 14: 1–14.

Weinbauer, M. G., O. Bonilla-Findji, A. M. Chan, J. R. Dolan, S. M. Short, K. Šimek, S. W. Wilhelm, a C. A. Suttle. 2011. Synechococcus growth in the ocean may depend on the lysis of heterotrophic bacteria. J. Plankton Res 33: 1465-1476.

Jezbera, J., J. Jezberova, U. Koll, K. Hornak, K. Šimek, a M. W. Hahn. 2012. Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467-479.

Zeng, Y., V. Kasalicky, K. Šimek, a M. Koblizek. 2012. Genome Sequences of Two Freshwater Betaproteobacterial Isolates, Limnohabitans Species Strains Rim28 and Rim47, Indicate Their Capabilities as Both Photoautotrophs and Ammonia Oxidizers. Journal of Bacteriology 194: 6302-6303.

Hahn, M. W., T. Scheuerl, J. Jezberova, U. Koll, J. Jezbera, K. Šimek, C. Vannini, G. Petroni, a Q. L. Wu. 2012. The Passive Yet Successful Way of Planktonic Life: Genomic and Experimental Analysis of the Ecology of a Free-Living Polynucleobacter Population. PLoS ONE 7: e32772.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, a J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Kasalicky, V., J. Jezbera, K. Šimek, a M. W. Hahn. 2013. The diversity of the Limnohabitans genus, an important group of freshwater bacterioplankton, by characterization of 35 isolated strains. PLoS ONE 8: e58209.

Jezbera, J., J. Jezberova, V. Kasalicky, K. Šimek, a M. W. Hahn. 2013. Patterns of Limnohabitans microdiversity across a large set of freshwater habitats as revealed by Reverse Line Blot Hybridization. PLoS ONE 8: e58527.

Eiler, A., S. Drakare, S. Bertilsson, J. Pernthaler, S. Peura, C. Rofner, K. Šimek, Y. Yang, P. Znachor, a E. S. Lindstrom. 2013. Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach. PLoS ONE 8: e53516.

Šimek, K., J. Nedoma, P. Znachor, V. Kasalicky, J. Jezbera, K. Hornak, a J. Seda. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492.

Weinbauer, M. G., J. R. Dolan, a K. Šimek. 2015. A population of giant tailed virus-like particles associated with heterotrophic flagellates in a lake-type reservoir. Aquatic Microbial Ecology 76: 111-116.

Grujčić, V., V. Kasalicky, a K. Šimek. 2015. Prey-specific growth responses of freshwater flagellate communities induced by morphologically distinct bacteria from the genus Limnohabitans. Applied and Environmental Microbiology 81: 4993–5002.

Pitsch, G., L. Adamec, S. Dirren, F. Nitsche, K. Šimek, D. Sirova, a T. Posch. 2016. The Green Tetrahymena utriculariae n. sp. (Ciliophora, Oligohymenophorea) with Its Endosymbiotic Algae (Micractinium sp.), Living in Traps of a Carnivorous Aquatic Plant. Journal of Eukaryotic Microbiology , doi:10.1111/jeu.12369

Salcher, M. M., C. Ewert, K. Šimek, V. Kasalicky, a T. Posch. 2016. Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology 92, doi:10.1093/femsec/fiv156

Salcher, M. M., a K. Šimek. 2016. Isolation and cultivation of planktonic freshwater microbes is essential for a comprehensive understanding of their ecology. Aquatic Microbial Ecology 77: 183-196.

Baltar, F., J. Palovaara, F. Unrein, P. Catala, K. Hornak, K. Šimek, D. Vaque, R. Massana, J. M. Gasol, a J. Pinhassi. 2016. Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions. ISME Journal 10: 568-581.

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, a M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.

Šimek, K., G. Pitsch, M. M. Salcher, D. Sirova, T. Shabarova, L. Adamec, a T. Posch. 2017. Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology 64: 336-348.

Pitsch, G., L. Adamec, S. Dirren, F. Nitsche, K. Šimek, D. Sirova, a T. Posch. 2017. The Green Tetrahymena utriculariae n. sp. (Ciliophora, Oligohymenophorea) with Its Endosymbiotic Algae (Micractinium sp.), Living in Traps of a Carnivorous Aquatic Plant. Journal of Eukaryotic Microbiology 64: 322-335.

Jezberova, J., J. Jezbera, P. Znachor, J. Nedoma, V. Kasalicky, a K. Šimek. 2017. Limnohabitans genus harbor generalist and opportunist genotype groups: evidence from spatiotemporal succession in a canyon-shaped reservoir. Appl. Environ. Microbiol. 83: e01530-17.