Biblio

Hornak, K., J. Jezbera, J. Nedoma, J. M. Gasol, a K. Šimek. 2006. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquatic Microbial Ecology 45: 277-289.

Chrzanowski, T. H., K. Šimek, R. H. Sada, a S. Williams. 1993. Estimates of bacterial growth rate constants from thymidine incorporation and variable conversion factors. Microbial Ecology 25: 121-130.

Šimek, K., J. Vrba, a P. Lavrentyev. 1994. Estimates of protozoan bacterivory: From microscopy to ectoenzyme assay?. Marine Microbial Food Webs 8: 71–85.

Vrba, J., K. Šimek, J. Pernthaler, a R. Psenner. 1996. Evaluation of extracellular, high-affinity beta-N-acetylglucosaminidase measurements from freshwater lakes: An enzyme assay to estimate protistan grazing on bacteria and picocyanobacteria. Microbial Ecology 32: 81–99.

Vrba, J., J. Kofronova-Bobkova, J. Pernthaler, K. Šimek, M. Macek, a R. Psenner. 1997. Extracellular, low-affinity beta-N-acetylglucosaminidases linked to the dynamics of diatoms and crustaceans in freshwater systems of different trophic degree. Internationale Revue Der Gesamten Hydrobiologie 82: 277–286.

Strojsova, A., J. Vrba, J. Nedoma, a K. Šimek. 2005. Extracellular phosphatase activity of freshwater phytoplankton exposed to different in situ phosphorus concentrations. Marine and Freshwater Research 56: 417–424.

Nedoma, J., J. - C. Garcia, M. Comerma, K. Šimek, a J. Armengol. 2006. Extracellular phosphatases in a Mediterranean reservoir: seasonal, spatial and kinetic heterogeneity. Freshwater Biology 51: 1264-1276.

Šimek, K., J. Nedoma, P. Znachor, V. Kasalicky, J. Jezbera, K. Hornak, a J. Seda. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492.

Šimek, K., a D. Sirova. 2019. Fluorescently labeled bacteria used as a tracer can reveal novel pathways of organic carbon flow in aquatic ecosystems. Journal of Visualized Experiments 151: e59903.

Jezbera, J., K. Hornak, a K. Šimek. 2005. Food selection by bacterivorous protists: insight from the analysis of the food vacuole content by means of Fluorescence In Situ Hybridization. FEMS Microbiology Ecology 52: 351-363.

Juergens, K., a K. Šimek. 2000. Functional response and particle size selection of Halteria cf. grandinella, a common freshwater oligotrichous ciliate. Aquatic Microbial Ecology 22: 57-68.

Zeng, Y., V. Kasalicky, K. Šimek, a M. Koblizek. 2012. Genome Sequences of Two Freshwater Betaproteobacterial Isolates, Limnohabitans Species Strains Rim28 and Rim47, Indicate Their Capabilities as Both Photoautotrophs and Ammonia Oxidizers. Journal of Bacteriology 194: 6302-6303.

Šimek, K., M. G. Weinbauer, K. Hornak, J. Jezbera, J. Nedoma, a J. R. Dolan. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology 9: 789-800.

Pitsch, G., L. Adamec, S. Dirren, F. Nitsche, K. Šimek, D. Sirova, a T. Posch. 2016. The Green Tetrahymena utriculariae n. sp. (Ciliophora, Oligohymenophorea) with Its Endosymbiotic Algae (Micractinium sp.), Living in Traps of a Carnivorous Aquatic Plant. Journal of Eukaryotic Microbiology , doi:10.1111/jeu.12369

Pitsch, G., L. Adamec, S. Dirren, F. Nitsche, K. Šimek, D. Sirova, a T. Posch. 2017. The Green Tetrahymena utriculariae n. sp. (Ciliophora, Oligohymenophorea) with Its Endosymbiotic Algae (Micractinium sp.), Living in Traps of a Carnivorous Aquatic Plant. Journal of Eukaryotic Microbiology 64: 322-335.

Vyhnalek, V., a K. Šimek. 1990. Growth of bacteria on organic matter produced by algae in continuous cultures. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 34: 37-42.

Macek, M., K. Šimek, J. Pernthaler, V. Vyhnalek, a R. Psenner. 1996. Growth rates of dominant planktonic ciliates in two freshwater bodies of different trophic degree. Journal of Plankton Research 18: 463-481.

Mehrshad, M., M. M. Salcher, Y. Okazaki, S. Nakano, K. Šimek, S. A. Andrei, a R. Ghai. 2018. Hidden in plain sight - highly abundant and diverse planktonic freshwater Chloroflexi. Microbiome 176.

Sirova, D., J. Bárta, K. Šimek, T. Posch, J. Pech, J. Stone, J. Borovec, L. Adamec, a J. Vrba. 2018. Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant. Microbiome 225, doi:10.1186/s40168-018-0600-7

Šimek, K., K. Hornak, J. Jezbera, M. Masin, J. Nedoma, J. M. Gasol, a M. Schauer. 2005. Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of beta-proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Applied And Environmental Microbiology 71: 2381-2390.

Dolan, J. R., a K. Šimek. 1998. Ingestion and digestion of an autotrophic picoplankter, Synechococcus, by a heterotrophic nanoflagellate, Bodo saltans. Limnology and Oceanography 43: 1740-1746.

Matena, J., K. Šimek, a C. H. Fernando. 1995. Ingestion of suspended bacteria by fish: a modified approach. Journal of Fish Biology 47: 334-336.

Salcher, M. M., C. Ewert, K. Šimek, V. Kasalicky, a T. Posch. 2016. Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology 92, doi:10.1093/femsec/fiv156

Straskrabova, V., C. Callieri, P. Carrillo, L. Cruz-Pizarro, J. Fott, P. Hartman, M. Macek, J. M. Medina-Sanchez, J. Nedoma, a K. Šimek. 1999. Investigations on pelagic food webs in mountain lake - aims and methods. Journal of Limnology 58: 77-87.

Salcher, M. M., a K. Šimek. 2016. Isolation and cultivation of planktonic freshwater microbes is essential for a comprehensive understanding of their ecology. Aquatic Microbial Ecology 77: 183-196.