Biblio

Eiler, A., S. Drakare, S. Bertilsson, J. Pernthaler, S. Peura, C. Rofner, K. Šimek, Y. Yang, P. Znachor, a E. S. Lindstrom. 2013. Unveiling Distribution Patterns of Freshwater Phytoplankton by a Next Generation Sequencing Based Approach. PLoS ONE 8: e53516.

Pernthaler, J., B. Sattler, K. Šimek, A. Schwarzenbacher, a R. Psenner. 1996. Top-down effects on the size-biomass distribution of a freshwater bacterioplankton community. Aquatic Microbial Ecology 10: 255-263.

Posch, T., J. Jezbera, J. Vrba, K. Šimek, J. Pernthaler, S. Andreatta, a B. Sonntag. 2001. Size selective feeding in Cyclidium glaucoma (Ciliophora, Scuticociliatida) and its effects on bacterial community structure: A study from a continuous cultivation system. Microbial Ecology 42: 217–227.

Pernthaler, J., K. Šimek, B. Sattler, A. Schwarzenbacher, J. Bobkova, a R. Psenner. 1996. Short-term changes of protozoan control on autotrophic picoplankton in an oligo-mesotrophic lake. Journal of Plankton Research 18: 443-462.

Allers, E., L. Gomez-Consarnau, J. Pinhassi, J. M. Gasol, K. Šimek, a J. Pernthaler. 2007. Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environmental Microbiology 9: 2417–2429.

Pernthaler, J., T. Posch, K. Šimek, J. Vrba, A. Pernthaler, F. O. Glockner, U. Nubel, R. Psenner, a R. Amann. 2001. Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Applied and Environmental Microbiology 67: 2145–2155.

Šimek, K., J. Vrba, J. Pernthaler, T. Posch, P. Hartman, J. Nedoma, a R. Psenner. 1997. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Applied and Environmental Microbiology 63: 587–595.

Macek, M., K. Šimek, J. Pernthaler, V. Vyhnalek, a R. Psenner. 1996. Growth rates of dominant planktonic ciliates in two freshwater bodies of different trophic degree. Journal of Plankton Research 18: 463-481.

Vrba, J., J. Kofronova-Bobkova, J. Pernthaler, K. Šimek, M. Macek, a R. Psenner. 1997. Extracellular, low-affinity beta-N-acetylglucosaminidases linked to the dynamics of diatoms and crustaceans in freshwater systems of different trophic degree. Internationale Revue Der Gesamten Hydrobiologie 82: 277–286.

Vrba, J., K. Šimek, J. Pernthaler, a R. Psenner. 1996. Evaluation of extracellular, high-affinity beta-N-acetylglucosaminidase measurements from freshwater lakes: An enzyme assay to estimate protistan grazing on bacteria and picocyanobacteria. Microbial Ecology 32: 81–99.

Mindl, B., B. Sonntag, J. Pernthaler, J. Vrba, R. Psenner, a T. Posch. 2005. Effects of phosphorus loading on interactions of algae and bacteria: reinvestigation of the ’phytoplankton-bacteria paradox’ in a continuous cultivation system. Aquatic Microbial Ecology 38: 203-213.

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, a M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.

Pernthaler, J., T. Posch, K. Šimek, J. Vrba, R. Amann, a R. Psenner. 1997. Contrasting bacterial strategies to coexist with a flagellate predator in an experimental microbial assemblage. Applied and Environmental Microbiology 63: 596–601.

Šimek, K., P. Hartman, J. Nedoma, J. Pernthaler, D. Springmann, J. Vrba, a R. Psenner. 1997. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology 12: 49–63.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, a R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., M. Macek, J. Pernthaler, V. Straskrabova, a R. Psenner. 1996. Can freshwater planktonic ciliates survive on a diet of picoplankton?. Journal of Plankton Research 18: 597-613.

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, a J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.