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Masin, M., J. Jezbera, J. Nedoma, V. Straskrabova, J. Hejzlar, a K. Šimek. 2003. Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading. Hydrobiologia 504: 99-113.

Vyhnalek, V., J. Komarkova, J. Seda, Z. Brandl, K. Šimek, a N. Johanisova. 1991. Clear water phase in the Rimov Reservoir (South Bohemia): Controlling factors. Verhandlungen der Internationalen Vereinigung für Theoretische und Angewandte Limnologie 24: 1336–1339.

Kopejtka, K., Y. Lin, M. Jakubovičová, M. Koblížek, a J. Tomasch. 2019. Clustered Core- and Pan-Genome Content on Rhodobacteraceae Chromosomes. Genome Biology and Evolution 11: 2208-2217.

Jersakova, J., P. Kindlmann, a S. S. Renner. 2006. Is the colour dimorphism in Dactylorhiza sambucina maintained by differential seed viability instead of frequency-dependent selection?. Folia Geobotanica 41: 61-76.

Hais, M., M. Jonasova, J. Langhammer, a T. Kucera. 2009. Comparison of two types of forest disturbance using multitemporal Landsat TM/ETM plus imagery and field vegetation data. Remote Sensing of Environment 113: 835-845.

Thonar, C., E. Frossard, P. Smilauer, a J. Jansa. 2014. Competition and facilitation in synthetic communities of arbuscular mycorrhizal fungi. Molecular Ecology 23: 733–746.

Májeková, M., Š. Janeček, O. Mudrak, J. Horník, P. Janeckova, M. Bartoš, K. Fajmon, Š. Jiráská, L. Götzenberger, P. Smilauer, J. Leps, a F. de Bello. 2016. Consistent functional response of meadow species and communities to land-use changes across productivity and soil moisture gradients. Applied Vegetation Science 19: 196–205.

Májeková, M., Š. Janeček, O. Mudrak, J. Horník, P. Janeckova, M. Bartoš, K. Fajmon, Š. Jiráská, L. Götzenberger, P. Smilauer, J. Leps, a F. de Bello. 2016. Consistent functional response of meadow species and communities to land-use changes across productivity and soil moisture gradients. Applied Vegetation Science 19: 196–205.

Májeková, M., Š. Janeček, O. Mudrak, J. Horník, P. Janeckova, M. Bartoš, K. Fajmon, Š. Jiráská, L. Götzenberger, P. Smilauer, J. Leps, a F. de Bello. 2016. Consistent functional response of meadow species and communities to land-use changes across productivity and soil moisture gradients. Applied Vegetation Science 19: 196–205.

Jezbera, J., J. Jezberova, U. Koll, K. Hornak, K. Šimek, a M. W. Hahn. 2012. Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467-479.

Jezbera, J., J. Jezberova, U. Koll, K. Hornak, K. Šimek, a M. W. Hahn. 2012. Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467-479.

Roll, U., I. Jarić, P. Jepson, A. L. da Costa-Pinto, B. R. Pinheiro, R. A. Correia, A. C. M. Malhado, a R. J. Ladle. 2021. COVID lockdowns increase public interest in urban nature. Frontiers in Ecology and the Environment 19: 320-322.

Roll, U., I. Jarić, P. Jepson, A. L. da Costa-Pinto, B. R. Pinheiro, R. A. Correia, A. C. M. Malhado, a R. J. Ladle. 2021. COVID lockdowns increase public interest in urban nature. Frontiers in Ecology and the Environment 19: 320-322.

Grujčić, V., J. Nuy, M. M. Salcher, T. Shabarova, V. Kasalicky, J. Boenigk, M. Jensen, a K. Šimek. 2018. Cryptophyta as major freshwater bacterivores in experiments with manipulated bacterial prey. ISME

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Roberts, D. L., J. S. Rossman, a I. Jarić. 2021. Dating first cases of COVID-19. PLOS Pathogens 17: e1009620.

Jansa, J., P. Smilauer, J. Boroviška, H. Hršelová, S. T. Forczek, K. Slámová, T. Řezanka, M. Rozmoš, P. Bukovská, a M. Gryndler. 2020. Dead Rhizophagus irregularis biomass mysteriously stimulates plant growth. Mycorrhiza accepted, doi:10.1007/s00572-020-00937-z

Riha, M., J. Kubečka, T. Mrkvička, M. Prchalova, M. Cech, V. Drastik, J. Frouzová, M. Hladik, E. Hohausova, O. Jarolim, T. Juza, M. Kratochvil, J. Peterka, M. Tuser, a M. Vasek. 2008. Dependence of beach seine net efficiency on net length and diel period. Aquatic Living Resources 21: 411–418.

Riha, M., J. Kubečka, T. Mrkvička, M. Prchalova, M. Cech, V. Drastik, J. Frouzová, M. Hladik, E. Hohausova, O. Jarolim, T. Juza, M. Kratochvil, J. Peterka, M. Tuser, a M. Vasek. 2008. Dependence of beach seine net efficiency on net length and diel period. Aquatic Living Resources 21: 411–418.

Tanaka, T., F. T. Thingstad, J. M. Gasol, C. Cardelus, J. Jezbera, M. M. Sala, K. Šimek, a F. Unrein. 2009. Determining the availability of phosphate and glucose for bacteria in P-limited mesocosms of NW Mediterranean surface waters. Aquatic Microbial Ecology 56: 81-91.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, a J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, a J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Correia, R. A., R. Ladle, I. Jarić, A. C. M. Malhado, J. Mittermeier, U. Roll, A. Soriano-Redondo, D. Veríssimo, J. Gdos Santos, C. Fink, A. Hausmann, R. Vardi, a E. Di Minin. 2021. Digital data sources and methods for conservation culturomics. Conservation Biology 35: 398-411.

Lennox, R. J., V. Sbragaglia, K. W. Vollset, L. K. Sortland, L. McClenachan, I. Jarić, M. L. Guckian, K. Ferter, A. J. Danylchuk, S. J. Cooke, R. Arlinghaus, a W. M. Twardek. 2022. Digital fisheries data in the Internet age: emerging tools for research and monitoring using online data in recreational fisheries. Fish and Fisheries 23: 926-940.

Prchalova, M., J. Kubečka, M. Vasek, J. Peterka, J. Seda, T. Juza, M. Riha, O. Jarolim, M. Tuser, M. Kratochvil, M. Cech, V. Drastik, J. Frouzová, a E. Hohausova. 2008. Distribution patterns of fishes in a canyon-shaped reservoir. Journal of Fish Biology 73: 54–78.

Prchalova, M., J. Kubečka, M. Vasek, J. Peterka, J. Seda, T. Juza, M. Riha, O. Jarolim, M. Tuser, M. Kratochvil, M. Cech, V. Drastik, J. Frouzová, a E. Hohausova. 2008. Distribution patterns of fishes in a canyon-shaped reservoir. Journal of Fish Biology 73: 54–78.