Biblio

Šimek, K., M. Macek, a V. Vyhnalek. 1990. Uptake of bacteria-sized fluorescent particles by natural protozoan assemblage in a reservoir. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 34: 276-281.

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, a J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, a R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., a V. Straskrabova. 1992. Bacterioplankton production and protozoan bacterivory in a mesotrophic reservoir. Journal of Plankton Research 14: 773-787.

Šimek, K., J. Vrba, a P. Hartman. 1994. Size-selective feeding by Cyclidium sp. on bacterioplankton and various sizes of cultured bacteria. FEMS Microbiology Ecology 14: 157–167.

Šimek, K., J. Vrba, a P. Lavrentyev. 1994. Estimates of protozoan bacterivory: From microscopy to ectoenzyme assay?. Marine Microbial Food Webs 8: 71–85.

Šimek, K., J. Vrba, J. Pernthaler, T. Posch, P. Hartman, J. Nedoma, a R. Psenner. 1997. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Applied and Environmental Microbiology 63: 587–595.

Šimek, K., M. G. Weinbauer, K. Hornak, J. Jezbera, J. Nedoma, a J. R. Dolan. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology 9: 789-800.

Šimek, K., J. Nedoma, P. Znachor, V. Kasalicky, J. Jezbera, K. Hornak, a J. Seda. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492.

Šimek, K., G. Pitsch, M. M. Salcher, D. Sirova, T. Shabarova, L. Adamec, a T. Posch. 2017. Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology 64: 336-348.

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, a T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759

Šimek, K., V. Grujčić, J. Nedoma, J. Jezberova, M. Sorf, A. Matoušů, L. Pechar, T. Posch, E. P. Bruni, a J. Vrba. 2019. Microbial food webs in hypertrophic fishponds: omnivorous ciliate taxa are major protistan bacterivores. Limnology and Oceanography 64: 2295–2309.

Šimek, K., a D. Sirova. 2019. Fluorescently labeled bacteria used as a tracer can reveal novel pathways of organic carbon flow in aquatic ecosystems. Journal of Visualized Experiments 151: e59903.

Šimek, K., V. Grujčić, I. Mukherjee, V. Kasalický, J. Nedoma, T. Posch, M. Mehrshad, a M. M. Salcher. 2020. Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology 96: fiaa121.

Šimek, K., I. Mukherjee, J. Nedoma, C. C. P. Paula, J. Jezberová, D. Sirová, a J. Vrba. 2022. CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes. Environmental Microbiology 24: 4256–4273.

Šimek, K., I. Mukherjee, T. Szöke-Nagy, M. Haber, M. M. Salcher, a R. Ghai. 2022. Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores. The ISME Journal