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Kopacek, J., M. Brzakova, J. Hejzlar, J. Kana, P. Porcal, a J. Vrba. 2003. Mass balance of nutrients and major solutes in the Plesne watershed - lake ecosystem in the 2001 hydrological year. Silva Gabreta 9: 33 - 52.

Kopacek, J., M. Brzakova, J. Hejzlar, J. Nedoma, P. Porcal, a J. Vrba. 2004. Nutrient cycling in a strongly acidified mesotrophic lake. Limnology and Oceanography 49: 1202-1213.

Kopacek, J., J. Hejzlar, J. Kana, P. Porcal, P. Psenakova, a J. Vrba. 2001. Element budgets in three Bohemian Forest lakes and their watersheds in the 2000 hydrological year: II. Cerne Lake. Silva Gabreta 6: 53 - 72.

Kopacek, J., J. Kana, a H. Santruckova. 2006. Pools and composition of soils in the alpine zone of the Tatra Mountains. Biologia 61: S35-S49.

Kopacek, J., J. Kana, H. Santruckova, T. Picek, a E. Stuchlik. 2004. Chemical and biochemical characteristics of alpine soils in the Tatra Mountains and their correlation with lake water quality. Water Air and Soil Pollution 153: 307-327.

Kopacek, J., E. Stuchlik, J. Vesely, J. Schaumburg, I. C. Anderson, J. Fott, J. Hejzlar, a J. Vrba. 2002. Hysteresis in reversal of Central European mountain lakes from atmospheric acidification. Water Air Soil Pollut. Focus 2: 91 - 114.

Kopacek, J., J. Turek, J. Hejzlar, a H. Santruckova. 2009. Canopy leaching of nutrients and metals in a mountain spruce forest. Atmospheric Environment 43: 5443-5453.

Kopacek, J., a J. Vrba. 2006. Integrated ecological research of catchment-lake ecosystems in the Bohemian Forest (Central Europe): A preface. Biologia 61: S363-S370.

Kopacek, J., J. Hejzlar, J. Vrba, a E. Stuchlik. 2011. Phosphorus loading of mountain lakes: Terrestrial export and atmospheric deposition. LIMNOLOGY AND OCEANOGRAPHY 56: 1343-1354.

Kopacek, J., B. J. Cosby, C. D. Evans, J. Hruska, F. Moldan, F. Oulehle, K. Tahovska, a R. F. Wright. 2013. Nitrogen, organic carbon and sulphur cycling in terrestrial ecosystems: linking nitrogen saturation to carbon limitation of soil microbial processes. BIOGEOCHEMISTRY 115: 33-51.

Kopacek, J., P. Cudlin, M. Svoboda, E. Chmelikova, J. Kana, a T. Picek. 2010. Composition of Norway spruce litter and foliage in atmospherically acidified and nitrogen-saturated Bohemian Forest stands, Czech Republic. BOREAL ENVIRONMENT RESEARCH 15: 413-426.

Kopacek, J., J. Kaňa, P. Porcal, J. Vrba, a S. A. Norton. 2019. Effects of tree dieback on lake water acidity in the unmanaged catchment of Plešné Lake, Czech Republic. Limnology and Oceanography 64: 1614–1626.