Biblio

Blom, J. F., K. Hornak, a K. Šimek. 2010. Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues. Environmental Microbiology 12: 2486-2495.

Šimek, K., V. Kasalicky, E. Zapomelova, a K. Hornak. 2011. Algal-derived substrates select for distinct betaproteobacterial lineages and contribute to niche separation in Limnohabitans strains. Appl. Environ. Microbiol. 77: 7307-7315.

Šimek, K., V. Kasalicky, K. Hornak, M. W. Hahn, a M. G. Weinbauer. 2010. Assessing niche separation in coexisting Limnohabitans strains through interactions with a competitor, viruses, and a bacterivore. Applied and Environmental Microbiology 76: 1406–1416.

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, a T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759

Hornak, K., J. Jezbera, a K. Šimek. 2010. Bacterial single-cell activities along the nutrient availability gradient in a canyon-shaped reservoir - a seasonal study. Aquatic Microbial Ecology 60: 215-225.

Posch, T., B. Mindl, K. Hornak, J. Jezbera, M. M. Salcher, B. Sattler, B. Sonntag, J. Vrba, a K. Šimek. 2007. Biomass reallocation within freshwater bacterioplankton induced by manipulating phosphorus availability and grazing. Aquatic Microbial Ecology 49: 223–232.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, a R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., K. Hornak, M. Masin, U. Christaki, J. Nedoma, M. G. Weinbauer, a J. R. Dolan. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135.

Jezbera, J., J. Jezberova, U. Koll, K. Hornak, K. Šimek, a M. W. Hahn. 2012. Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467-479.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, a J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Hornak, K., J. Jezbera, a K. Šimek. 2008. Effects of a Microcystis aeruginosa bloom and bacterivory on bacterial abundance and activity in a eutrophic reservoir. Aquatic Microbial Ecology 52: 107-117.

Hornak, K., M. Masin, J. Jezbera, Y. Bettarel, J. Nedoma, T. Sime-Ngando, a K. Šimek. 2005. Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiology Ecology 52: 315-327.

Hornak, K., J. Jezbera, J. Nedoma, J. M. Gasol, a K. Šimek. 2006. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquatic Microbial Ecology 45: 277-289.

Šimek, K., J. Nedoma, P. Znachor, V. Kasalicky, J. Jezbera, K. Hornak, a J. Seda. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492.

Jezbera, J., K. Hornak, a K. Šimek. 2005. Food selection by bacterivorous protists: insight from the analysis of the food vacuole content by means of Fluorescence In Situ Hybridization. FEMS Microbiology Ecology 52: 351-363.

Šimek, K., M. G. Weinbauer, K. Hornak, J. Jezbera, J. Nedoma, a J. R. Dolan. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology 9: 789-800.

Šimek, K., K. Hornak, J. Jezbera, M. Masin, J. Nedoma, J. M. Gasol, a M. Schauer. 2005. Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of beta-proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Applied And Environmental Microbiology 71: 2381-2390.

Baltar, F., J. Palovaara, F. Unrein, P. Catala, K. Hornak, K. Šimek, D. Vaque, R. Massana, J. M. Gasol, a J. Pinhassi. 2016. Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions. ISME Journal 10: 568-581.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, J. Vrba, V. Straskrabova, M. Macek, J. R. Dolan, a M. W. Hahn. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology 8: 1613–1624.

Groben, R., M. W. Hahn, K. Hornak, J. Mergeay, K. Šimek, a J. Vrba. 2007. Meeting report: ALTER-net workshop about the "application of molecular techniques to study biodiversity, structure and function of planktonic communities in lakes’’ at Blanes, Spain, February 15-16, 2007. Protist 158: 417-421.

Salcher, M. M., J. Hofer, K. Hornak, J. Jezbera, B. Sonntag, J. Vrba, K. Šimek, a T. Posch. 2007. Modulation of microbial predator-prey dynamics by phosphorus availability: Growth patterns and survival strategies of bacterial phylogenetic clades. FEMS Microbiology Ecology 60: 40–50.

Jezbera, J., K. Hornak, a K. Šimek. 2006. Prey selectivity of bacterivorous protists in different size fractions of reservoir water amended with nutrients. Environmental Microbiology 8: 1330-1339.

Šimek, K., J. Jezbera, K. Hornak, J. Vrba, a J. Seda. 2004. Role of diatom-attached choanoilagellates of the genus Salpingoeca as pelagic bacterivores. Aquatic Microbial Ecology 36: 257–269.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, P. Znachor, J. Hejzlar, a J. Seda. 2008. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology 51: 249-262.

Hornak, K., V. Kasalicky, K. Šimek, a H. - P. Grossart. 2017. Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans-C and Polynucleobacter-B clusters of Betaproteobacteria. Environ. Microbiol. 19: 4519–4535.