Biblio

Komarkova, J., and K. Šimek. 2003. Unicellular and colonial formations of picoplanktonic cyanobacteria under variable environmental conditions and predation pressure. Archiv für Hydrobiologie Algological Studies 109: 327-340.

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, and J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.

Bettarel, Y., J. R. Dolan, K. Hornak, R. Lemee, M. Masin, M. L. Pedrotti, E. Rochelle-Newall, K. Šimek, and T. Sime-Ngando. 2002. Strong, weak and missing links in a microbial community of the NW Mediterranean Sea. FEMS Microbiology Ecology 42: 451–462.

Gasol, J. M., M. Comerma, J. - C. Garcia, J. Armengol, E. O. Casamayor, P. Kojecka, and K. Šimek. 2002. A transplant experiment to identify the factors controlling bacterial abundance, activity, production, and community composition in a eutrophic canyon-shaped reservoir. Limnology and Oceanography 47: 62-77.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, and R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, P. Kojecka, J. Nedoma, and J. Hejzlar. 2001. Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microbial Ecology 42: 359-371.

Macek, M., K. Šimek, and T. Bittl. 2001. Conspicuous peak of oligotrichous ciliates following winter stratification in a bog lake. Journal of Plankton Research 23: 353-363.

Comerma, M., J. - C. Garcia, J. Armengol, M. Romero, and K. Šimek. 2001. Planktonic food web structure along the Sau Reservoir (Spain) in summer 1997. International Review of Hydrobiology 86: 195-209.

Pernthaler, J., T. Posch, K. Šimek, J. Vrba, A. Pernthaler, F. O. Glockner, U. Nubel, R. Psenner, and R. Amann. 2001. Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Applied and Environmental Microbiology 67: 2145–2155.

Posch, T., J. Jezbera, J. Vrba, K. Šimek, J. Pernthaler, S. Andreatta, and B. Sonntag. 2001. Size selective feeding in Cyclidium glaucoma (Ciliophora, Scuticociliatida) and its effects on bacterial community structure: A study from a continuous cultivation system. Microbial Ecology 42: 217–227.

Šimek, K., J. E. Cooper, T. Picek, and H. Santruckova. 2000. Denitrification in arable soils in relation to their physico-chemical properties and fertilization practice. Soil Biology & Biochemistry 32: 101–110.

Šimek, K., K. Juergens, J. Nedoma, M. Comerma, and J. Armengol. 2000. Ecological role and bacterial grazing of Halteria spp.: small freshwater oligotrichs as dominant pelagic ciliate bacterivores. Aquatic Microbial Ecology 22: 43-56.

Juergens, K., and K. Šimek. 2000. Functional response and particle size selection of Halteria cf. grandinella, a common freshwater oligotrichous ciliate. Aquatic Microbial Ecology 22: 57-68.

Straskrabova, V., K. Šimek, M. Macek, P. Hartman, J. Fott, and M. Blazo. 2000. Pelagic food webs and microbial loop in mountain lakes sensitive to acidification W.D. Williams [ed.]. INTERNATIONAL ASSOCIATION OF THEORETICAL AND APPLIED LIMNOLOGY, VOL 27, PT 1, PROCEEDINGS 27: 513-516.

Straskrabova, V., J. Fott, P. Hartman, M. Macek, J. Nedoma, K. Šimek, and J. Vrba. 2000. Structure of pelagic food webs in low-alkalinity lakes - forested and alpine catchments. Silva Gabreta 4: 199 - 211.

Šimek, K., D. W. Hopkins, J. Kalcik, T. Picek, H. Santruckova, J. Stana, and K. Travnik. 1999. Biological and chemical properties of arable soils affected by long-term organic and inorganic fertilizer applications. Biology and Fertility of Soils 29: 300–308.

Dolan, J. R., and K. Šimek. 1999. Diel periodicity in Synechococcus and grazing by heterotrophic nanoflagellates: analysis of food vacuole contents. Limnology and Oceanography 44: 1565-1570.

Straskrabova, V., C. Callieri, P. Carrillo, L. Cruz-Pizarro, J. Fott, P. Hartman, M. Macek, J. M. Medina-Sanchez, J. Nedoma, and K. Šimek. 1999. Investigations on pelagic food webs in mountain lake - aims and methods. Journal of Limnology 58: 77-87.

Posch, T., K. Šimek, J. Vrba, S. Pernthaler, J. Nedoma, B. Sattler, B. Sonntag, and R. Psenner. 1999. Predator-induced changes of bacterial size-structure and productivity studied on an experimental microbial community. Aquatic Microbial Ecology 18: 235–246.

Šimek, K., P. Kojecka, J. Nedoma, P. Hartman, J. Vrba, and J. R. Dolan. 1999. Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir. Limnology and Oceanography 44: 1634–1644.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, T. H. Chrzanowski, M. Macek, J. Nedoma, and V. Straskrabova. 1998. Characteristics of protistan control of bacterial production in three reservoirs of different trophy. International Review of Hydrobiology 83: 485-494.

Hejzlar, J., P. Dolejs, J. Komarkova, J. Seda, K. Šimek, and V. Vyhnalek. 1998. Effect of biomanipulation on the structuring of the planktonic food web and water treatability by coagulation. Water Science and Technology 37: 105-112.

Dolan, J. R., and K. Šimek. 1998. Ingestion and digestion of an autotrophic picoplankter, Synechococcus, by a heterotrophic nanoflagellate, Bodo saltans. Limnology and Oceanography 43: 1740-1746.

Hejzlar, J., J. Kopacek, J. Vrba, H. Cizkova, J. Komarkova, and K. Šimek. 1998. Limnological study of Plešné Lake in 1994-1995. Silva Gabreta 2: 155-174.

Straskrabova, V., Z. Brandl, J. Hrbacek, J. Komarkova, J. Seda, M. Straskraba, and K. Šimek. 1998. Long-term changes of bacteria, phytoplankton and zooplankton: Temporal coherence between deep stratified reservoirs. International Review of Hydrobiology 83: 21–30.