Biblio

Vrba, J., J. Nedoma, L. Kohout, J. Kopacek, L. Nedbalova, P. Rackova, and K. Šimek. 2003. Massive occurrence of heterotrophic filaments in acidified lakes: seasonal dynamics and composition. FEMS Microbiology Ecology 46: 281–294.

Straskrabova, V., J. Nedoma, K. Šimek, and J. Vrba. 2003. Pelagic microbial assemblages in oligotrophic mountain lakes. Acta Universitatis Ecologiae 10: 15 - 17.

Nedoma, J., V. Straskrabova, P. Znachor, and J. Vrba. 2003. Primary and bacterial production in three acidified lakes in the Bohemian Forest. Silva Gabreta 9: 53 - 70.

Strojsova, A., J. Vrba, J. Nedoma, J. Komarkova, and P. Znachor. 2003. Seasonal study of extracellular phosphatase expression in the phytoplankton of a eutrophic reservoir. European Journal of Phycology 38: 295–306.

Vrba, J., C. Callieri, T. Bittl, K. Šimek, R. Bertoni, P. Filandr, P. Hartman, J. Hejzlar, M. Macek, and J. Nedoma. 2004. Are bacteria the major producers of extracellular glycolytic enzymes in aquatic environments?. International Review of Hydrobiology 89: 102–117.

Kopacek, J., M. Brzakova, J. Hejzlar, J. Nedoma, P. Porcal, and J. Vrba. 2004. Nutrient cycling in a strongly acidified mesotrophic lake. Limnology and Oceanography 49: 1202-1213.

Znachor, P., J. Vrba, J. Nedoma, and J. Kopacek. 2005. Bacterial and phytoplankton responses to nutrient and pH changes during short term in situ experiments in two acidified lakes. Algological Studies 115: 79 - 99.

Hornak, K., M. Masin, J. Jezbera, Y. Bettarel, J. Nedoma, T. Sime-Ngando, and K. Šimek. 2005. Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiology Ecology 52: 315-327.

Strojsova, A., J. Vrba, J. Nedoma, and K. Šimek. 2005. Extracellular phosphatase activity of freshwater phytoplankton exposed to different in situ phosphorus concentrations. Marine and Freshwater Research 56: 417–424.

Šimek, K., K. Hornak, J. Jezbera, M. Masin, J. Nedoma, J. M. Gasol, and M. Schauer. 2005. Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of beta-proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Applied And Environmental Microbiology 71: 2381-2390.

Hornak, K., J. Jezbera, J. Nedoma, J. M. Gasol, and K. Šimek. 2006. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquatic Microbial Ecology 45: 277-289.

Nedoma, J., J. - C. Garcia, M. Comerma, K. Šimek, and J. Armengol. 2006. Extracellular phosphatases in a Mediterranean reservoir: seasonal, spatial and kinetic heterogeneity. Freshwater Biology 51: 1264-1276.

Vrba, J., J. Kopacek, T. Bittl, J. Nedoma, A. Strojsova, L. Nedbalova, L. Kohout, and J. Fott. 2006. A key role of aluminium in phosphorus availability, food web structure, and plankton dynamics in strongly acidified lakes. Biologia 61: S441–S451.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, J. Vrba, V. Straskrabova, M. Macek, J. R. Dolan, and M. W. Hahn. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology 8: 1613–1624.

Nedoma, J., and J. Vrba. 2006. Specific activity of cell-surface acid phosphatase in different bacterioplankton morphotypes in an acidified mountain lake. Environmental Microbiology 8: 1271-1279.

Šimek, K., M. G. Weinbauer, K. Hornak, J. Jezbera, J. Nedoma, and J. R. Dolan. 2007. Grazer and virus-induced mortality of bacterioplankton accelerates development of Flectobacillus populations in a freshwater community. Environmental Microbiology 9: 789-800.

Weinbauer, M. G., K. Hornak, J. Jezbera, J. Nedoma, J. R. Dolan, and K. Šimek. 2007. Synergistic and antagonistic effects of viral lysis and protistan grazing on bacterial biomass, production and diversity. Environmental Microbiology 9: 777-788.

Strojsova, M., J. Nedoma, J. Seda, and J. Vrba. 2008. Diet quality impact on growth, reproduction and digestive activity in Brachionus calyciflorus. Journal of Plankton Research 30: 1123–1131.

Nedoma, J., M. Strojsova, X. Cao, and J. Vrba. 2008. The role of cell-surface-bound phosphatases in species competition within natural phytoplankton assemblage: an in situ experiment. JOURNAL OF LIMNOLOGY 67: 128-138.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, P. Znachor, J. Hejzlar, and J. Seda. 2008. Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology 51: 249-262.

Šimek, K., M. Comerma, J. C. García, R. Marcé, J. Nedoma, and J. Armengol. 2011. The effect of river water circulation on the distribution and functioning of reservoir microbial communities as determined by a relative distance approach. Ecosystems 14: 1–14.

Ctvrtlikova, M., P. Znachor, J. Nedoma, and J. Vrba. 2012. Effects of temperature on the phenology of germination of Isoetes echinospora. PRESLIA 84: 141-153.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, and J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Šimek, K., J. Nedoma, P. Znachor, V. Kasalicky, J. Jezbera, K. Hornak, and J. Seda. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492.

Ctvrtlikova, M., J. Hejzlar, J. Vrba, J. Kopacek, J. Nedoma, P. Hekera, A. J. Wade, and S. Roy. 2016. Lake water acidification and temperature have a lagged effect on the population dynamics of Isoëtes echinospora via offspring recruitment. Ecological Indicators 70: 420-430.