Biblio

Vrba, J., K. Šimek, J. Nedoma, and P. Hartman. 1993. 4-methylumbelliferyl-beta-N-acetylglucosaminide hydrolysis by a high-affinity enzyme, a putative marker of protozoan bacterivory. Applied and Environmental Microbiology 59: 3091–3101.

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, and J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.

Vrba, J., C. Callieri, T. Bittl, K. Šimek, R. Bertoni, P. Filandr, P. Hartman, J. Hejzlar, M. Macek, and J. Nedoma. 2004. Are bacteria the major producers of extracellular glycolytic enzymes in aquatic environments?. International Review of Hydrobiology 89: 102–117.

Znachor, P., J. Vrba, J. Nedoma, and J. Kopacek. 2005. Bacterial and phytoplankton responses to nutrient and pH changes during short term in situ experiments in two acidified lakes. Algological Studies 115: 79 - 99.

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, and T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, and R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Masin, M., J. Jezbera, J. Nedoma, V. Straskrabova, J. Hejzlar, and K. Šimek. 2003. Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading. Hydrobiologia 504: 99-113.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, P. Kojecka, J. Nedoma, and J. Hejzlar. 2001. Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microbial Ecology 42: 359-371.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, T. H. Chrzanowski, M. Macek, J. Nedoma, and V. Straskrabova. 1998. Characteristics of protistan control of bacterial production in three reservoirs of different trophy. International Review of Hydrobiology 83: 485-494.

Šimek, K., P. Hartman, J. Nedoma, J. Pernthaler, D. Springmann, J. Vrba, and R. Psenner. 1997. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology 12: 49–63.

Šimek, K., K. Hornak, M. Masin, U. Christaki, J. Nedoma, M. G. Weinbauer, and J. R. Dolan. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135.

Weinbauer, M. G., U. Christaki, J. Nedoma, and K. Šimek. 2003. Comparing the effects of resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 137-144.

Vrba, J., V. Vyhnalek, J. Hejzlar, and J. Nedoma. 1995. Comparison of Phosphorus Deficiency-indexes During A Spring Phytoplankton Bloom In A Eutrophic Reservoir. Freshwater Biology 33: 73–81.

Strojsova, M., J. Nedoma, J. Seda, and J. Vrba. 2008. Diet quality impact on growth, reproduction and digestive activity in Brachionus calyciflorus. Journal of Plankton Research 30: 1123–1131.

Vrba, J., P. Filandr, J. Nedoma, and K. Šimek. 1996. Different sources of extracellular beta-N-acetylhexosaminidase-like activities in freshwaters R.A.A. Muzzarelli [ed.]. Chitin enzymology 2: 293 - 301.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, and J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, and M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.

Šimek, K., K. Juergens, J. Nedoma, M. Comerma, and J. Armengol. 2000. Ecological role and bacterial grazing of Halteria spp.: small freshwater oligotrichs as dominant pelagic ciliate bacterivores. Aquatic Microbial Ecology 22: 43-56.

Šimek, K., M. Comerma, J. C. García, R. Marcé, J. Nedoma, and J. Armengol. 2011. The effect of river water circulation on the distribution and functioning of reservoir microbial communities as determined by a relative distance approach. Ecosystems 14: 1–14.

Hornak, K., M. Masin, J. Jezbera, Y. Bettarel, J. Nedoma, T. Sime-Ngando, and K. Šimek. 2005. Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiology Ecology 52: 315-327.

Hornak, K., J. Jezbera, J. Nedoma, J. M. Gasol, and K. Šimek. 2006. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquatic Microbial Ecology 45: 277-289.

Ctvrtlikova, M., P. Znachor, J. Nedoma, and J. Vrba. 2012. Effects of temperature on the phenology of germination of Isoetes echinospora. PRESLIA 84: 141-153.

Vrba, J., M. Macholdová, L. Nedbalova, J. Nedoma, and M. Sorf. 2018. An experimental insight into extracellular phosphatases – differential induction of cell-specific activity in green algae cultured under various phosphorus conditions. Frontiers in Microbiology 9, doi:10.3389/fmicb.2018.00271

Strojsova, A., J. Vrba, J. Nedoma, and K. Šimek. 2005. Extracellular phosphatase activity of freshwater phytoplankton exposed to different in situ phosphorus concentrations. Marine and Freshwater Research 56: 417–424.

Nedoma, J., J. - C. Garcia, M. Comerma, K. Šimek, and J. Armengol. 2006. Extracellular phosphatases in a Mediterranean reservoir: seasonal, spatial and kinetic heterogeneity. Freshwater Biology 51: 1264-1276.