Biblio

Šimek, K., a T. H. Chrzanowski. 1992. Direct and indirect evidence of size-selective grazing on pelagic bacteria by fresh-water nanoflagellates. Applied and Environmental Microbiology 58: 3715-3720.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, a J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Vrba, J., P. Filandr, J. Nedoma, a K. Šimek. 1996. Different sources of extracellular beta-N-acetylhexosaminidase-like activities in freshwaters R.A.A. Muzzarelli [ed.]. Chitin enzymology 2: 293 - 301.

Dolan, J. R., a K. Šimek. 1999. Diel periodicity in Synechococcus and grazing by heterotrophic nanoflagellates: analysis of food vacuole contents. Limnology and Oceanography 44: 1565-1570.

Tanaka, T., F. T. Thingstad, J. M. Gasol, C. Cardelus, J. Jezbera, M. M. Sala, K. Šimek, a F. Unrein. 2009. Determining the availability of phosphate and glucose for bacteria in P-limited mesocosms of NW Mediterranean surface waters. Aquatic Microbial Ecology 56: 81-91.

Piwosz, P., T. Shabarova, J. Tomasch, K. Šimek, K. Kopejtka, S. Kahl, D. H. Pieper, a M. Koblizek. 2018. Determining lineage-specific bacterial growth dynamics with a novel approach based on amplicon reads normalization using internal standard (ARNIS). ISME J. 12: 2640-2654.

Kristufek, V., K. Šimek, B. Grunda, a P. Puncochar. 1987. Determination of the number of bacteria in the soil by epifluorescence microscopy using membrane filters. Folia Microbiologica 32: 506-507.

Šimek, K., J. E. Cooper, T. Picek, a H. Santruckova. 2000. Denitrification in arable soils in relation to their physico-chemical properties and fertilization practice. Soil Biology & Biochemistry 32: 101–110.

Grujčić, V., J. Nuy, M. M. Salcher, T. Shabarova, V. Kasalicky, J. Boenigk, M. Jensen, a K. Šimek. 2018. Cryptophyta as major freshwater bacterivores in experiments with manipulated bacterial prey. ISME

Šimek, K., I. Mukherjee, T. Szöke-Nagy, M. Haber, M. M. Salcher, a R. Ghai. 2022. Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores. The ISME Journal

Jezbera, J., J. Jezberova, U. Koll, K. Hornak, K. Šimek, a M. W. Hahn. 2012. Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467-479.

Pernthaler, J., T. Posch, K. Šimek, J. Vrba, R. Amann, a R. Psenner. 1997. Contrasting bacterial strategies to coexist with a flagellate predator in an experimental microbial assemblage. Applied and Environmental Microbiology 63: 596–601.

Macek, M., K. Šimek, a T. Bittl. 2001. Conspicuous peak of oligotrichous ciliates following winter stratification in a bog lake. Journal of Plankton Research 23: 353-363.

Šimek, K., a J. Fuksa. 1987. Comparison of changes of microbial activity in water determined autoradiographically and as maximum rate of glucose incorporation. Folia Microbiologica 32: 508.

Weinbauer, M. G., U. Christaki, J. Nedoma, a K. Šimek. 2003. Comparing the effects of resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 137-144.

Šimek, K., K. Hornak, M. Masin, U. Christaki, J. Nedoma, M. G. Weinbauer, a J. R. Dolan. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135.

Šimek, K., P. Hartman, J. Nedoma, J. Pernthaler, D. Springmann, J. Vrba, a R. Psenner. 1997. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology 12: 49–63.

Vyhnalek, V., J. Komarkova, J. Seda, Z. Brandl, K. Šimek, a N. Johanisova. 1991. Clear water phase in the Rimov Reservoir (South Bohemia): Controlling factors. Verhandlungen der Internationalen Vereinigung für Theoretische und Angewandte Limnologie 24: 1336–1339.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, T. H. Chrzanowski, M. Macek, J. Nedoma, a V. Straskrabova. 1998. Characteristics of protistan control of bacterial production in three reservoirs of different trophy. International Review of Hydrobiology 83: 485-494.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, P. Kojecka, J. Nedoma, a J. Hejzlar. 2001. Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microbial Ecology 42: 359-371.

Masin, M., J. Jezbera, J. Nedoma, V. Straskrabova, J. Hejzlar, a K. Šimek. 2003. Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading. Hydrobiologia 504: 99-113.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, a R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., V. Grujčić, I. Mukherjee, V. Kasalický, J. Nedoma, T. Posch, M. Mehrshad, a M. M. Salcher. 2020. Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes. FEMS Microbiology Ecology 96: fiaa121.

Šimek, K., I. Mukherjee, J. Nedoma, C. C. P. Paula, J. Jezberová, D. Sirová, a J. Vrba. 2022. CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes. Environmental Microbiology 24: 4256–4273.

Comerma, A., J. - C. Garcia, M. Romero, J. Armengol, a K. Šimek. 2003. Carbon flow dynamics in the pelagic community of the Sau Reservoir (Catalonia, NE Spain). Hydrobiologia 504: 87-98.