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Riha, M., J. Kubečka, M. Vasek, J. Seda, T. Mrkvička, M. Prchalova, J. Matena, M. Hladik, M. Cech, V. Drastik, J. Frouzová, E. Hohausova, O. Jarolim, T. Juza, M. Kratochvil, J. Peterka, a M. Tuser. 2009. Long-term development of fish populations in the Rimov Reservoir. Fisheries Management and Ecology 16: 121–129.

Kubečka, J., a A. Duncan. 1994. Low Fish Predation Pressure In the London Reservoirs .1. Species Composition, Density and Biomass. Internationale Revue Der Gesamten Hydrobiologie 79: 143-155.

Renton, P. J., A. Duncan, J. Kubečka, a J. Seda. 1995. The Management Implications of Low Fish Stocks In the London Reservoirs. Journal of Water Supply Research and Technology-aqua 44: 72–79.

Baran, R., P. Blabolil, M. Cech, V. Draštík, J. Frouzova, M. Holubová, T. Jůza, I. Koliada, M. Muška, J. Peterka, M. Prchalová, M. Říha, Z. Sajdlová, M. Šmejkal, M. Tušer, L. Vejřík, a J. Kubečka. 2021. New way to investigate fish density and distribution in the shallowest layers of the open water. Fisheries Research 238: 105907.

Souza, A. T., K. Soukalová, V. Děd, M. Šmejkal, P. Blabolil, M. Říha, T. Jůza, M. Vašek, M. Cech, J. Peterka, L. Vejřík, I. Vejříková, M. Tušer, M. .Muška, M. Holubová, D. S. Boukal, a J. Kubečka. 2020. Ontogenetic and interpopulation differences in otolith shape of the European perch (Perca fluviatilis). Fisheries Research 230: 105673.

Cech, M., a J. Kubečka. 2006. Ontogenetic changes in the bathypelagic distribution of European perch fry Perea fluviatilis monitored by hydroacoustic methods. Biologia 61: 211-219.

Blabolil, P., David S. Boukal, D. Ricard, J. Kubečka, M. Riha, M. Vasek, M. Prchalova, M. Cech, J. Frouzová, T. Juza, M. Muska, M. Tuser, V. Drastik, M. Šmejkal, L. Vejřík, a J. Peterka. 2017. Optimal gillnet sampling design for the estimation of fish community indicators in heterogeneous freshwater ecosystems. Ecological Indicators 77: 368 - 376.

Prchalova, M., J. Kubečka, M. Riha, R. Litvin, M. Cech, J. Frouzová, M. Hladik, E. Hohausova, J. Peterka, a M. Vasek. 2008. Overestimation of percid fishes (Percidae) in gillnet sampling. Fisheries Research 91: 79–87.

Duncan, A., a J. Kubečka. 1996. Patchiness of longitudinal fish distributions in a river as revealed by a continuous hydroacoustic survey. Ices Journal of Marine Science 53: 161-165.

Riha, M., D. Ricard, M. Vasek, M. Prchalova, T. Mrkvička, T. Juza, M. Cech, V. Drastik, M. Muska, M. Kratochvil, J. Peterka, M. Tuser, J. Seda, P. Blabolil, M. Bláha, J. Wanzenböck, a J. Kubečka. 2015. Patterns in diel habitat use of fish covering the littoral and pelagic zones in a reservoir. Hydrobiologia 747: 111-131.

Juza, T., J. Zemanová, M. Tuser, Z. Sajdlova, R. Baran, M. Vasek, D. Ricard, P. Blabolil, A. J. Wagenvoort, H. A. M. Ketelaars, a J. Kubečka. 2015. Pelagic occurrence and diet of invasive round goby Neogobius melanostomus (Actinopterygii, Gobiidae) juveniles in deep well-mixed European reservoirs. Hydrobiologia , doi:10.1007/s10750-015-2548-y

Blabolil, P., D. Ricard, J. Peterka, M. Riha, T. Juza, M. Vasek, M. Prchalova, M. Cech, M. Muska, J. Seda, T. Mrkvička, David S. Boukal, a J. Kubečka. 2016. Predicting asp and pikeperch recruitment in a riverine reservoir. Fisheries Research 173: 45-52.

Poikane, S., D. Ritterbusch, C. Argillier, W. Białokoz, P. Blabolil, J. Breine, N. G. Jaarsma, T. Krause, J. Kubečka, T. L. Lauridsen, P. Noges, G. Peirson, a T. Virbickas. 2017. Response of fish communities to multiple pressures: Development of a total anthropogenic pressure intensity index. Science of the Total Environment 586: 502-511.

Šmejkal, M., D. Ricard, L. Vejřík, T. Mrkvička, L. Vebrová, R. Baran, P. Blabolil, Z. Sajdlova, I. Vejříková, M. Prchalova, a J. Kubečka. 2017. Seasonal and daily protandry in a cyprinid fish. Scientific Reports , doi:10.1038/s41598-017-04827-x

Kubečka, J. 1996. Selectivity of Breder traps for sampling fish fry. Stock Assessment In Inland Fisheries 76-81.

Duncan, A., A. J. Butterworth, F. Gerlotto, a J. Kubečka. 1998. Shallow water fisheries acoustics - Introduction. Fisheries Research 35: 1-3.

Duncan, A., a J. Kubečka. 1998. Shallow water fisheries acoustics - The future. Fisheries Research 35: 149-150.

Trevorrov, M., J. Burczynski, a J. Kubečka. 2000. Shallow Water Fisheries Sonar - 2nd International Conference - Proceedings of an International Conference held at the University of Washington, Seattle, WA, USA September 7-9, 1999. Aquatic Living Resources 13: 267–267.

Blabolil, P., M. Riha, D. Ricard, J. Peterka, M. Prchalova, M. Vasek, M. Cech, J. Frouzová, T. Juza, M. Muska, M. Tuser, V. Drastik, Z. Sajdlova, M. Šmejkal, L. Vejřík, J. Matena, David S. Boukal, D. Ritterbusch, a J. Kubečka. 2017. A simple fish-based approach to assess the ecological quality of freshwater reservoirs in Central Europe. Knowl. Manag. Aquat. Ecosyst. 418, doi:10.1051/kmae/2017043

Kubečka, J. 1994. Simple-model On the Relationship Between Fish Acoustical Target Strength and Aspect For High-frequency Sonar In Shallow Waters. Journal of Applied Ichthyology-zeitschrift Fur Angewandte Ichthyologie 10: 75-81.

Cech, M., a J. Kubečka. 2002. Sinusoidal cycling swimming pattern of reservoir fishes. Journal of Fish Biology 61: 456-471.

Cech, M., P. Cech, J. Kubečka, M. Prchalova, a V. Drastik. 2008. Size Selectivity in Summer and Winter Diets of Great Cormorant (Phalacrocorax carbo): Does it Reflect Season-Dependent Difference in Foraging Efficiency?. Waterbirds 31: 438-447.

Prchalova, M., J. Kubečka, M. Riha, T. Mrkvička, M. Vasek, T. Juza, M. Kratochvil, J. Peterka, V. Drastik, a J. Krizek. 2009. Size selectivity of standardized multimesh gillnets in sampling coarse European species. Fisheries Research 96: 51–57.

Vejřík, L., I. Matějíčková, T. Juza, J. Frouzová, J. Seda, P. Blabolil, D. Ricard, M. Vasek, J. Kubečka, M. Riha, a M. Cech. 2016. Small fish use the hypoxic pelagic zone as a refuge from predators. Freshwater Biology , doi:10.1111/fwb.12753

Lucas, M. C., T. Mercer, E. Batley, P. A. Frear, G. Peirson, A. Duncan, a J. Kubečka. 1998. Spatio-temporal variations in the distribution and abundance of fish in the Yorkshire Ouse system. Science of the Total Environment 210: 437-455.