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Kopacek, J., E. Stuchlik, J. Vesely, J. Schaumburg, I. C. Anderson, J. Fott, J. Hejzlar, a J. Vrba. 2002. Hysteresis in reversal of Central European mountain lakes from atmospheric acidification. Water Air Soil Pollut. Focus 2: 91 - 114.

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Bittl, T., J. Vrba, J. Nedoma, a J. Kopacek. 2001. Impact of ionic aluminium on extracellular phosphatases in acidified lakes. Environmental Microbiology 3: 578-587.

Vyhnalek, V., J. Hejzlar, J. Nedoma, a J. Vrba. 1993. Importance of the River Inflow For the Spring Development of Plankton In Rimov Reservoir (czechoslovakia). Advances In Limnology, Vol 40 - Proceedings of the Second International Conference On Reservoir Limnology and Water Quality 40: 51–56.

Kopacek, J., a J. Vrba. 2006. Integrated ecological research of catchment-lake ecosystems in the Bohemian Forest (Central Europe): A preface. Biologia 61: S363-S370.

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Vrba, J., J. Kopacek, T. Bittl, J. Nedoma, A. Strojsova, L. Nedbalova, L. Kohout, a J. Fott. 2006. A key role of aluminium in phosphorus availability, food web structure, and plankton dynamics in strongly acidified lakes. Biologia 61: S441–S451.

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Ctvrtlikova, M., J. Hejzlar, J. Vrba, J. Kopacek, J. Nedoma, P. Hekera, A. J. Wade, a S. Roy. 2016. Lake water acidification and temperature have a lagged effect on the population dynamics of Isoëtes echinospora via offspring recruitment. Ecological Indicators 70: 420-430.

Fott, J., L. Nedbalova, M. Brabec, R. Kozáková, K. Řeháková, J. Hejzlar, M. Sorf, a J. Vrba. 2022. Light as a controlling factor of winter phytoplankton in a monomictic reservoir. Limnologica 95: 125995.

Rychtecký, P., K. Řeháková, E. Kozlíková, a J. Vrba. 2015. Light Availability May Control Extracellular Phosphatase Production in Turbid Environments. Microbial Ecology 69: 37-44.

Vrba, J., J. Kopacek, V. Straskrabova, J. Hejzlar, a K. Šimek. 1996. Limnological research of acidified lakes in Czech part of the Sumava Mountains: trophic status and dominance of microbial food webs. Silva Gabreta 1: 151 - 164.

Hejzlar, J., J. Kopacek, J. Vrba, H. Cizkova, J. Komarkova, a K. Šimek. 1996. Limnological study of Plesne Lake in 1994-1995. Silva Gabreta 2: 155 - 174.

Hejzlar, J., J. Kopacek, J. Vrba, H. Cizkova, J. Komarkova, a K. Šimek. 1998. Limnological study of Plešné Lake in 1994-1995. Silva Gabreta 2: 155-174.

Vrba, J., J. Fott, L. Kohout, J. Kopacek, M. Macek, a L. Nedbalova. 2008. Limnological survey of the lakes Wielki Staw and Maly Staw in the Giant Mts. (Karkonosze). Opera Concortica 45: 45 - 58.

Straskrabova, V., K. Šimek, a J. Vrba. 2005. Long-term development of reservoir ecosystems - changes in pelagic food webs and their microbial component. Limnetica 24: 9 - 20.

Vrba, J., J. Kopacek, K. Tahovska, a H. Santruckova. 2015. Long-term ecological research of glacial lakes in the Bohemian Forest and their catchments. Silva Gabreta 21: 53-71.

Vrba, J., J. Kopacek, a J. Fott. 2000. Long-term limnological research of the Bohemian Forest lakes and their recent status. Silva Gabreta 4: 7 - 27.

Vrba, J., J. Kopacek, J. Fott, L. Kohout, L. Nedbalova, M. Prazakova, T. Soldan, a J. Schaumburg. 2003. Long-term studies (1871-2000) on acidification and recovery of lakes in the Bohemian Forest (central Europe). Science of the Total Environment 310: 73–85.

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Francová, K., K. Šumberová, A. Kučerová, M. Ctvrtlikova, M. Sorf, J. Borovec, B. Drozd, G. A. Janauer, a J. Vrba. 2019. Macrophyte assemblages in fishponds under different fish farming management. Aquatic Botany 159: 103131.

Kopacek, J., M. Brzakova, J. Hejzlar, J. Kana, P. Porcal, a J. Vrba. 2003. Mass balance of nutrients and major solutes in the Plesne watershed - lake ecosystem in the 2001 hydrological year. Silva Gabreta 9: 33 - 52.

Vrba, J., J. Nedoma, L. Kohout, J. Kopacek, L. Nedbalova, P. Rackova, a K. Šimek. 2003. Massive occurrence of heterotrophic filaments in acidified lakes: seasonal dynamics and composition. FEMS Microbiology Ecology 46: 281–294.

Šimek, K., K. Hornak, J. Jezbera, J. Nedoma, J. Vrba, V. Straskrabova, M. Macek, J. R. Dolan, a M. W. Hahn. 2006. Maximum growth rates and possible life strategies of different bacterioplankton groups in relation to phosphorus availability in a freshwater reservoir. Environmental Microbiology 8: 1613–1624.

Groben, R., M. W. Hahn, K. Hornak, J. Mergeay, K. Šimek, a J. Vrba. 2007. Meeting report: ALTER-net workshop about the "application of molecular techniques to study biodiversity, structure and function of planktonic communities in lakes’’ at Blanes, Spain, February 15-16, 2007. Protist 158: 417-421.

Stockdale, A., E. Tipping, S. Lofts, J. Fott, O. A. Garmo, J. Hruska, B. Keller, S. Loefgren, S. C. Maberlyh, V. Majer, S. A. Nierzwicki-Bauer, G. Persson, A. - K. Schartau, S. J. Thackeray, A. Valois, J. Vrba, B. Walseng, a N. Yan. 2014. Metal and proton toxicity to lake zooplankton: A chemical speciation based modelling approach. ENVIRONMENTAL POLLUTION 186: 115-125.

Straskrabova, V., J. Komarkova, M. Macek, J. Seda, K. Šimek, J. Vrba, a V. Vyhnalek. 1993. Microbial algal crustacean interactions in a reservoir under different fishstock. Archiv für Hydrobiologie Beihefte Ergebnisse der Limnologie 40: 209–221.

Sirova, D., J. Borovec, B. Cerna, E. Rejmankova, L. Adamec, a J. Vrba. 2009. Microbial community development in the traps of aquatic Utricularia species. Aquatic Botany 90: 129–136.

Vrba, J., J. Nedoma, K. Šimek, a J. Seda. 1992. Microbial decomposition of polymer organic matter related to plankton development in a reservoir - activity of alpha-glucosidase, beta-glucosidase, and beta-N-acetylglucosaminidase and uptake of N-acetylglucosamine. Archiv für Hydrobiologie 126: 193–211.