Biblio

Šimek, K., P. Hartman, J. Nedoma, J. Pernthaler, D. Springmann, J. Vrba, a R. Psenner. 1997. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology 12: 49–63.

Šimek, K., K. Hornak, M. Masin, U. Christaki, J. Nedoma, M. G. Weinbauer, a J. R. Dolan. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135.

Weinbauer, M. G., U. Christaki, J. Nedoma, a K. Šimek. 2003. Comparing the effects of resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 137-144.

Šimek, K., a J. Fuksa. 1987. Comparison of changes of microbial activity in water determined autoradiographically and as maximum rate of glucose incorporation. Folia Microbiologica 32: 508.

Macek, M., K. Šimek, a T. Bittl. 2001. Conspicuous peak of oligotrichous ciliates following winter stratification in a bog lake. Journal of Plankton Research 23: 353-363.

Pernthaler, J., T. Posch, K. Šimek, J. Vrba, R. Amann, a R. Psenner. 1997. Contrasting bacterial strategies to coexist with a flagellate predator in an experimental microbial assemblage. Applied and Environmental Microbiology 63: 596–601.

Jezbera, J., J. Jezberova, U. Koll, K. Hornak, K. Šimek, a M. W. Hahn. 2012. Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467-479.

Šimek, K., I. Mukherjee, T. Szöke-Nagy, M. Haber, M. M. Salcher, a R. Ghai. 2022. Cryptic and ubiquitous aplastidic cryptophytes are key freshwater flagellated bacterivores. The ISME Journal

Grujčić, V., J. Nuy, M. M. Salcher, T. Shabarova, V. Kasalicky, J. Boenigk, M. Jensen, a K. Šimek. 2018. Cryptophyta as major freshwater bacterivores in experiments with manipulated bacterial prey. ISME

Šimek, K., J. E. Cooper, T. Picek, a H. Santruckova. 2000. Denitrification in arable soils in relation to their physico-chemical properties and fertilization practice. Soil Biology & Biochemistry 32: 101–110.

Kristufek, V., K. Šimek, B. Grunda, a P. Puncochar. 1987. Determination of the number of bacteria in the soil by epifluorescence microscopy using membrane filters. Folia Microbiologica 32: 506-507.

Piwosz, P., T. Shabarova, J. Tomasch, K. Šimek, K. Kopejtka, S. Kahl, D. H. Pieper, a M. Koblizek. 2018. Determining lineage-specific bacterial growth dynamics with a novel approach based on amplicon reads normalization using internal standard (ARNIS). ISME J. 12: 2640-2654.

Tanaka, T., F. T. Thingstad, J. M. Gasol, C. Cardelus, J. Jezbera, M. M. Sala, K. Šimek, a F. Unrein. 2009. Determining the availability of phosphate and glucose for bacteria in P-limited mesocosms of NW Mediterranean surface waters. Aquatic Microbial Ecology 56: 81-91.

Dolan, J. R., a K. Šimek. 1999. Diel periodicity in Synechococcus and grazing by heterotrophic nanoflagellates: analysis of food vacuole contents. Limnology and Oceanography 44: 1565-1570.

Vrba, J., P. Filandr, J. Nedoma, a K. Šimek. 1996. Different sources of extracellular beta-N-acetylhexosaminidase-like activities in freshwaters R.A.A. Muzzarelli [ed.]. Chitin enzymology 2: 293 - 301.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, a J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Šimek, K., a T. H. Chrzanowski. 1992. Direct and indirect evidence of size-selective grazing on pelagic bacteria by fresh-water nanoflagellates. Applied and Environmental Microbiology 58: 3715-3720.

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, a M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.

Kasalicky, V., J. Jezbera, K. Šimek, a M. W. Hahn. 2013. The diversity of the Limnohabitans genus, an important group of freshwater bacterioplankton, by characterization of 35 isolated strains. PLoS ONE 8: e58209.

Šimek, K., K. Juergens, J. Nedoma, M. Comerma, a J. Armengol. 2000. Ecological role and bacterial grazing of Halteria spp.: small freshwater oligotrichs as dominant pelagic ciliate bacterivores. Aquatic Microbial Ecology 22: 43-56.

Šimek, K., G. Pitsch, M. M. Salcher, D. Sirova, T. Shabarova, L. Adamec, a T. Posch. 2017. Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa. Journal of Eukaryotic Microbiology 64: 336-348.

Hejzlar, J., P. Dolejs, J. Komarkova, J. Seda, K. Šimek, a V. Vyhnalek. 1998. Effect of biomanipulation on the structuring of the planktonic food web and water treatability by coagulation. Water Science and Technology 37: 105-112.

Šimek, K., M. Comerma, J. C. García, R. Marcé, J. Nedoma, a J. Armengol. 2011. The effect of river water circulation on the distribution and functioning of reservoir microbial communities as determined by a relative distance approach. Ecosystems 14: 1–14.

Hornak, K., J. Jezbera, a K. Šimek. 2008. Effects of a Microcystis aeruginosa bloom and bacterivory on bacterial abundance and activity in a eutrophic reservoir. Aquatic Microbial Ecology 52: 107-117.

Hornak, K., M. Masin, J. Jezbera, Y. Bettarel, J. Nedoma, T. Sime-Ngando, a K. Šimek. 2005. Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiology Ecology 52: 315-327.