Biblio

Šimek, K., K. Hornak, J. Jezbera, M. Masin, J. Nedoma, J. M. Gasol, a M. Schauer. 2005. Influence of top-down and bottom-up manipulations on the R-BT065 subcluster of beta-proteobacteria, an abundant group in bacterioplankton of a freshwater reservoir. Applied And Environmental Microbiology 71: 2381-2390.

Vrba, J., C. Callieri, T. Bittl, K. Šimek, R. Bertoni, P. Filandr, P. Hartman, J. Hejzlar, M. Macek, a J. Nedoma. 2004. Are bacteria the major producers of extracellular glycolytic enzymes in aquatic environments?. International Review of Hydrobiology 89: 102–117.

Kopacek, J., M. Brzakova, J. Hejzlar, J. Nedoma, P. Porcal, a J. Vrba. 2004. Nutrient cycling in a strongly acidified mesotrophic lake. Limnology and Oceanography 49: 1202-1213.

Masin, M., J. Jezbera, J. Nedoma, V. Straskrabova, J. Hejzlar, a K. Šimek. 2003. Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading. Hydrobiologia 504: 99-113.

Šimek, K., K. Hornak, M. Masin, U. Christaki, J. Nedoma, M. G. Weinbauer, a J. R. Dolan. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135.

Weinbauer, M. G., U. Christaki, J. Nedoma, a K. Šimek. 2003. Comparing the effects of resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 137-144.

Jezbera, J., J. Nedoma, a K. Šimek. 2003. Longitudinal changes in protistan bacterivory and bacterial production in two canyon-shaped reservoirs of different trophic status. Hydrobiologia 504: 115-130.

Vrba, J., J. Nedoma, L. Kohout, J. Kopacek, L. Nedbalova, P. Rackova, a K. Šimek. 2003. Massive occurrence of heterotrophic filaments in acidified lakes: seasonal dynamics and composition. FEMS Microbiology Ecology 46: 281–294.

Straskrabova, V., J. Nedoma, K. Šimek, a J. Vrba. 2003. Pelagic microbial assemblages in oligotrophic mountain lakes. Acta Universitatis Ecologiae 10: 15 - 17.

Nedoma, J., V. Straskrabova, P. Znachor, a J. Vrba. 2003. Primary and bacterial production in three acidified lakes in the Bohemian Forest. Silva Gabreta 9: 53 - 70.

Strojsova, A., J. Vrba, J. Nedoma, J. Komarkova, a P. Znachor. 2003. Seasonal study of extracellular phosphatase expression in the phytoplankton of a eutrophic reservoir. European Journal of Phycology 38: 295–306.

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, a J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, a R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, P. Kojecka, J. Nedoma, a J. Hejzlar. 2001. Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microbial Ecology 42: 359-371.

Bittl, T., J. Vrba, J. Nedoma, a J. Kopacek. 2001. Impact of ionic aluminium on extracellular phosphatases in acidified lakes. Environmental Microbiology 3: 578-587.

Nedoma, J., J. Vrba, T. Hanzl, a L. Nedbalova. 2001. Quantification of pelagic filamentous microorganisms in aquatic environments using the line-intercept method. FEMS Microbiology Ecology 38: 81-85.

Šimek, K., K. Juergens, J. Nedoma, M. Comerma, a J. Armengol. 2000. Ecological role and bacterial grazing of Halteria spp.: small freshwater oligotrichs as dominant pelagic ciliate bacterivores. Aquatic Microbial Ecology 22: 43-56.

Straskrabova, V., J. Fott, P. Hartman, M. Macek, J. Nedoma, K. Šimek, a J. Vrba. 2000. Structure of pelagic food webs in low-alkalinity lakes - forested and alpine catchments. Silva Gabreta 4: 199 - 211.

Straskrabova, V., C. Callieri, P. Carrillo, L. Cruz-Pizarro, J. Fott, P. Hartman, M. Macek, J. M. Medina-Sanchez, J. Nedoma, a K. Šimek. 1999. Investigations on pelagic food webs in mountain lake - aims and methods. Journal of Limnology 58: 77-87.

Posch, T., K. Šimek, J. Vrba, S. Pernthaler, J. Nedoma, B. Sattler, B. Sonntag, a R. Psenner. 1999. Predator-induced changes of bacterial size-structure and productivity studied on an experimental microbial community. Aquatic Microbial Ecology 18: 235–246.

Šimek, K., P. Kojecka, J. Nedoma, P. Hartman, J. Vrba, a J. R. Dolan. 1999. Shifts in bacterial community composition associated with different microzooplankton size fractions in a eutrophic reservoir. Limnology and Oceanography 44: 1634–1644.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, T. H. Chrzanowski, M. Macek, J. Nedoma, a V. Straskrabova. 1998. Characteristics of protistan control of bacterial production in three reservoirs of different trophy. International Review of Hydrobiology 83: 485-494.

Šimek, K., D. Babenzien, T. Bittl, R. Koschel, M. Macek, J. Nedoma, a J. Vrba. 1998. Microbial food webs in an artificially divided acidic bog lake. International Review of Hydrobiology 83: 3–18.

Šimek, K., P. Hartman, J. Nedoma, J. Pernthaler, D. Springmann, J. Vrba, a R. Psenner. 1997. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology 12: 49–63.

Šimek, K., J. Vrba, J. Pernthaler, T. Posch, P. Hartman, J. Nedoma, a R. Psenner. 1997. Morphological and compositional shifts in an experimental bacterial community influenced by protists with contrasting feeding modes. Applied and Environmental Microbiology 63: 587–595.