Biblio

Vrba, J., K. Šimek, J. Nedoma, a P. Hartman. 1993. 4-methylumbelliferyl-beta-N-acetylglucosaminide hydrolysis by a high-affinity enzyme, a putative marker of protozoan bacterivory. Applied and Environmental Microbiology 59: 3091–3101.

Šimek, K., J. Nedoma, J. Pernthaler, T. Posch, a J. R. Dolan. 2002. Altering the balance between bacterial production and protistan bacterivory triggers shifts in freshwater bacterial community composition. Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology 81: 453-463.

Vrba, J., C. Callieri, T. Bittl, K. Šimek, R. Bertoni, P. Filandr, P. Hartman, J. Hejzlar, M. Macek, a J. Nedoma. 2004. Are bacteria the major producers of extracellular glycolytic enzymes in aquatic environments?. International Review of Hydrobiology 89: 102–117.

Znachor, P., J. Vrba, J. Nedoma, a J. Kopacek. 2005. Bacterial and phytoplankton responses to nutrient and pH changes during short term in situ experiments in two acidified lakes. Algological Studies 115: 79 - 99.

Šimek, K., V. Grujčić, M. W. Hahn, K. Hornak, J. Jezberová, V. Kasalicky, J. Nedoma, M. M. Salcher, a T. Shabarova. 2018. Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates. Limnol. Oceanogr , doi:10.1002/lno.10759

Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, a R. Amann. 2001. Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67: 2723-2733.

Masin, M., J. Jezbera, J. Nedoma, V. Straskrabova, J. Hejzlar, a K. Šimek. 2003. Changes in bacterial community composition and microbial activities along the longitudinal axis of two canyon-shaped reservoirs with different inflow loading. Hydrobiologia 504: 99-113.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, P. Kojecka, J. Nedoma, a J. Hejzlar. 2001. Changes in the epilimnetic bacterial community composition, production, and protist-induced mortality along the longitudinal axis of a highly eutrophic reservoir. Microbial Ecology 42: 359-371.

Šimek, K., J. Armengol, M. Comerma, J. - C. Garcia, T. H. Chrzanowski, M. Macek, J. Nedoma, a V. Straskrabova. 1998. Characteristics of protistan control of bacterial production in three reservoirs of different trophy. International Review of Hydrobiology 83: 485-494.

Šimek, K., P. Hartman, J. Nedoma, J. Pernthaler, D. Springmann, J. Vrba, a R. Psenner. 1997. Community structure, picoplankton grazing and zooplankton control of heterotrophic nanoflagellates in a eutrophic reservoir during the summer phytoplankton maximum. Aquatic Microbial Ecology 12: 49–63.

Šimek, K., K. Hornak, M. Masin, U. Christaki, J. Nedoma, M. G. Weinbauer, a J. R. Dolan. 2003. Comparing the effects of resource enrichment and grazing on a bacterioplankton community of a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 123-135.

Weinbauer, M. G., U. Christaki, J. Nedoma, a K. Šimek. 2003. Comparing the effects of resource enrichment and grazing on viral production in a meso-eutrophic reservoir. Aquatic Microbial Ecology 31: 137-144.

Vrba, J., V. Vyhnalek, J. Hejzlar, a J. Nedoma. 1995. Comparison of Phosphorus Deficiency-indexes During A Spring Phytoplankton Bloom In A Eutrophic Reservoir. Freshwater Biology 33: 73–81.

Strojsova, M., J. Nedoma, J. Seda, a J. Vrba. 2008. Diet quality impact on growth, reproduction and digestive activity in Brachionus calyciflorus. Journal of Plankton Research 30: 1123–1131.

Vrba, J., P. Filandr, J. Nedoma, a K. Šimek. 1996. Different sources of extracellular beta-N-acetylhexosaminidase-like activities in freshwaters R.A.A. Muzzarelli [ed.]. Chitin enzymology 2: 293 - 301.

Šimek, K., V. Kasalicky, J. Jezbera, K. Hornak, J. Nedoma, M. W. Hahn, D. Bass, S. Jost, a J. Boenigk. 2013. Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519-1530.

Shabarova, T., V. Kasalicky, K. Šimek, J. Nedoma, P. Znachor, T. Posch, J. Pernthaler, a M. M. Salcher. 2017. Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach. Environmental Microbiology 19: 1296–1309.

Šimek, K., K. Juergens, J. Nedoma, M. Comerma, a J. Armengol. 2000. Ecological role and bacterial grazing of Halteria spp.: small freshwater oligotrichs as dominant pelagic ciliate bacterivores. Aquatic Microbial Ecology 22: 43-56.

Šimek, K., M. Comerma, J. C. García, R. Marcé, J. Nedoma, a J. Armengol. 2011. The effect of river water circulation on the distribution and functioning of reservoir microbial communities as determined by a relative distance approach. Ecosystems 14: 1–14.

Hornak, K., M. Masin, J. Jezbera, Y. Bettarel, J. Nedoma, T. Sime-Ngando, a K. Šimek. 2005. Effects of decreased resource availability, protozoan grazing and viral impact on a structure of bacterioplankton assemblage in a canyon-shaped reservoir. FEMS Microbiology Ecology 52: 315-327.

Hornak, K., J. Jezbera, J. Nedoma, J. M. Gasol, a K. Šimek. 2006. Effects of resource availability and bacterivory on leucine incorporation in different groups of freshwater bacterioplankton, assessed using microautoradiography. Aquatic Microbial Ecology 45: 277-289.

Vrba, J., M. Macholdová, L. Nedbalova, J. Nedoma, a M. Sorf. 2018. An experimental insight into extracellular phosphatases – differential induction of cell-specific activity in green algae cultured under various phosphorus conditions. Frontiers in Microbiology 9, doi:10.3389/fmicb.2018.00271

Strojsova, A., J. Vrba, J. Nedoma, a K. Šimek. 2005. Extracellular phosphatase activity of freshwater phytoplankton exposed to different in situ phosphorus concentrations. Marine and Freshwater Research 56: 417–424.

Nedoma, J., J. - C. Garcia, M. Comerma, K. Šimek, a J. Armengol. 2006. Extracellular phosphatases in a Mediterranean reservoir: seasonal, spatial and kinetic heterogeneity. Freshwater Biology 51: 1264-1276.

Šimek, K., J. Nedoma, P. Znachor, V. Kasalicky, J. Jezbera, K. Hornak, a J. Seda. 2014. A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492.